SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69226

Length: 171 nt

UniGene Fasta

>sp_v3.0_unigene69226
CGTCGTGACCTTGGCTGTCACTCATGGTTATTATGTGCTACTGTCAAATATTTATGCAGCAGCTGGCAGGTGGGATGATGCAGCAAAGGTGCGAACAATGATGAAAGATAAGGGATTGAAAACAACACCAGCACGTAGCTTCATTGAGGTAAATAATGGGATTCATTCATT

Ace file of the UniGene sp_v3.0_unigene69226

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 77 n=1 Tax=Funaria hygrometrica RepID=F5CAE2_FUNHY	-	-	5.0e-10	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%

Source	Gene names
Sma3	GSVIVT00014458001; GSVIVT00019609001; VITISV_001089;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49142.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18215788-18217848 REVERSE LENGTH=686	8.0e-14	60%
RefSeq	Arabidopsis thaliana	NP_001190038.1	tetratricopeptide repeat-like family protein [Arabidopsis thaliana]	1.0e-13	60%
RefSeq	Populus trichocarpa	XP_002302000.1	predicted protein [Populus trichocarpa]	1.0e-13	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 56 - 312

Fln protein: VVTLAVTHGYYVLLSNIYAAAGRWDDAAKVRTMMKDKGLKTTPARSFIEVNNGIHS

Protein Length: 57

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTATTATGTGCTACTGTCAAATATTTATGCAGCAGCTGGCAGGTGGGATGATGCAGCAAAGGTGCGAACAATGATGAAAGATAAGGGATTGAAAACAACACCAGCACGTAGCTTCATTGAGGTAAATAATGGGATTCATTCATT

Fln Alignment:

GG46A6U01A261F___GYYVLLSNIYAAAGRWDDAAKVRTMMKDKGLKTTPARSFIEVNNGIHS
D5ADG9_______________GYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGCSLIEVNNKLHS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain