UniGene Name: sp_v3.0_unigene68941
Length: 211 nt
UniGene Fasta |
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>sp_v3.0_unigene68941
C |
Ace file of the UniGene sp_v3.0_unigene68941 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | DNA polymerase n=4 Tax=Arabidopsis RepID=Q9ZVC8_ARATH | - | - | 6.0e-11 | 81% |
FL-Next | sp=DNA polymerase; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). | - | - | 0.0 | 81% |
Sma3 | DNA polymerase | - | - | 1.579e-23 | - |
Source | ECs | Term | Type | e value | Identity |
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Sma3 | DNA-directed DNA polymerase. | EC:2.7.7.7 | - | 3.247e-25 | - |
Source | KEGGs | Term | Type | e value | Identity |
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Sma3 | Purine metabolism | 00230 | 3.247e-25 | % | |
Sma3 | Pyrimidine metabolism | 00240 | 3.247e-25 | % | |
Sma3 | Metabolic pathways | 01100 | 3.247e-25 | % |
Source | Gene names |
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Sma3 | At1g08260; At2g27120; GSVIVT00022048001; OSJNBa0001A11.28; Os02g0511900; OsI_07377; OsJ_06880; PHYPADRAFT_136896; POPTRDRAFT_594813; RCOM_0792580; VITISV_040149; |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | epsilon DNA polymerase complex | GO:0008622 | Cellular Component | 0.0 | - |
Sma3 | apoplast | GO:0048046 | Cellular Component | 0.0 | - |
Sma3 | nucleotide binding | GO:0000166 | Molecular Function | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | DNA-directed DNA polymerase activity | GO:0003887 | Molecular Function | 0.0 | - |
Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
Sma3 | DNA replication | GO:0006260 | Biological Process | 0.0 | - |
Sma3 | positive regulation of S phase of mitotic cell cycle | GO:0045750 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | RNA polymerase sigma-70 factor | IPR000943 | - | 0.0 | - |
Sma3 | Aminotransferase, class-II, pyridoxal-phosphate binding site | IPR001917 | - | 0.0 | - |
Sma3 | DNA-directed DNA polymerase, family B, exonuclease domain | IPR006133 | - | 0.0 | - |
Sma3 | DNA-directed DNA polymerase, family B, multifunctional domain | IPR006134 | - | 0.0 | - |
Sma3 | DNA-directed DNA polymerase, family B | IPR006172 | - | 0.0 | - |
Sma3 | DNA polymerase epsilon, catalytic subunit A, C-terminal | IPR013697 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT2G27120.1 | POL2B, TIL2 DNA polymerase epsilon catalytic subunit chr2:11581223-11594346 FORWARD LENGTH=2138 | 5.0e-15 | 81% |
RefSeq | Arabidopsis thaliana | NP_180280.2 | DNA polymerase epsilon subunit 1 [Arabidopsis thaliana] | 6.0e-15 | 81% |
RefSeq | Populus trichocarpa | XP_002328167.1 | predicted protein [Populus trichocarpa] | 2.0e-14 | 79% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: tr_plants
Fln subject: D7LG74
Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1086 aas, your sequence is shorter than subject: 67 - 2133
Fln protein:
V
Protein Length:
68
Fln nts:
C
Fln Alignment:
GG46A6U01A0MGM___DYISESSTMSKSLLDYGAQKSCAVTTAKRLADFLEMQWLKTKGL
D7LG74_______________DYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTMVKDKGL
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain