SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68853

Length: 168 nt

UniGene Fasta

>sp_v3.0_unigene68853
CGTCGTGACCTTGGCTGTCACTCAGGTCTGGGAATACGTCAAAGCTAACAGTCTCCAGAATCCTGCAAACAAGCGAGAGATACTGTGTGACGAGAGACTGAAAGGCATCTTTGGTCAAAAGGAGAATGTTAATATGTTCGAGGTTTCAAAGTTAATCTCTCCACATTT

Ace file of the UniGene sp_v3.0_unigene68853

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gb\|AAK44049.1\|AF370234_1 unknown protein [Arabidopsis thaliana] gb\|AAL15230.1\| unknown protein [Arabidopsis thaliana] gb\|AAM15040.1\| Expressed protein [Arabidopsis thaliana] gb\|AAM15113.1\| Express	-	-	9.0e-13	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Putative uncharacterized protein At2g35605/T20F21.29	-	-	3.899e-06	-

Source	Gene names
Sma3	At2g35605; At2g35605/T20F21.29;

Source	InterPros	Term	Type	e value	Identity
Sma3	SWIB/MDM2 domain	IPR003121	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G35605.1	SWIB/MDM2 domain superfamily protein chr2:14946161-14947027 FORWARD LENGTH=109	5.0e-19	62%
RefSeq	Arabidopsis thaliana	NP_565810.1	SWIB/MDM2 domain-containing protein [Arabidopsis thaliana]	6.0e-19	62%
RefSeq	Populus trichocarpa	XP_002319215.1	predicted protein [Populus trichocarpa]	4.0e-13	45%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACT3

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 55 - 129

Fln protein: VVTLAVTQVWEYVKANSLQNPANKREILCDERLKGIFGQKENVNMFEVSKLISPH

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCTGGGAATACGTCAAAGCTAACAGTCTCCAGAATCCTGCAAACAAGCGAGAGATACTGTGTGACGAGAGACTGAAAGGCATCTTTGGTCAAAAGGAGAATGTTAATATGTTCGAGGTTTCAAAGTTAATCTCTCCACATTT

Fln Alignment:

GG46A6U01DZB09___AVTQVWEYVKANSLQNPANKREILCDERLKGIFGQKENVNMFEVSKLISPH
D5ACT3_______________AIKKIWEHIKANNLQNPANKTEILCDEKLKAILGQKENVNMFEIAKLISPH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain