SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68803

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene68803
CGTCGTGACCTTGGCTGTCACTCATGGCCTGGACGTGGAATATAAACGCATCCCATGCGATTATCCAGGGAAAAATATGTCCATCAAAGTAGACAAAAGCAGTCACTATCCCGACTATCTTGCTGTCCAGTTTCTGTATCAAGGAGGCCAAACAGACATTTCCTTGGTTCAAGTTAGCCAGGTAGGACACTGGAGTTGGCGTGAAATGAGTCTGCGCAATTACAGTGCAGTGT

Ace file of the UniGene sp_v3.0_unigene68803

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen allergen n=1 Tax=Pinus radiata RepID=O65013_PINRA	-	-	1.0e-23	71%
FL-Next	tr=Pollen allergen; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	71%
Sma3	Expansin-like protein	-	-	1.02e-08	-

Source	Gene names
Sma3	EXLA1; EXLA3; EXPL3; LOC_Os07g29290; Os07g0475400; OsI_25963; P0571D04.118; PRE29;

Source	GOs	Term	Type	e value	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	0.0	-
Sma3	sexual reproduction	GO:0019953	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3		IPR005132	-	-
Sma3	Major pollen allergen Lol pI	IPR005795	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G38400.1	ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2, EXLA2 expansin-like A2 chr4:17978675-17979665 REVERSE LENGTH=265	2.0e-18	49%
RefSeq	Arabidopsis thaliana	NP_195553.1	expansin-like A2 [Arabidopsis thaliana]	2.0e-18	49%
RefSeq	Populus trichocarpa	XP_002313682.1	hypothetical protein POPTRDRAFT_832983 [Populus trichocarpa]	1.0e-19	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: O65013

Fln msg: Distance to subject end: 78 aas, your sequence is shorter than subject: 77 - 293

Fln protein: VVTLAVTHGLDVEYKRIPCDYPGKNMSIKVDKSSHYPDYLAVQFLYQGGQTDISLVQVSQVGHWSWREMSLRNYSAV

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGCCTGGACGTGGAATATAAACGCATCCCATGCGATTATCCAGGGAAAAATATGTCCATCAAAGTAGACAAAAGCAGTCACTATCCCGACTATCTTGCTGTCCAGTTTCTGTATCAAGGAGGCCAAACAGACATTTCCTTGGTTCAAGTTAGCCAGGTAGGACACTGGAGTTGGCGTGAAATGAGTCTGCGCAATTACAGTGCAGTGT

Fln Alignment:

GG46A6U01BHOGP___GLDVEYKRIPCDYPGKNMSIKVDKSSHYPDYLAVQFLYQGGQTDISLVQVSQVGHWSWREMSLRNYSAV
O65013_______________GLDVEYKRVPCEYPGQNMAIKVDESSAYPNFLAVKFLYEGGQTDISAVEVARVGQWRWYSMSARKYSAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain