SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68718

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene68718
GCGTCGTGACCTTGGCTGTCACTCAGGGCTTCCAAGCATATTCAATAACCCATGCAGGTATCCTCCGCCTCGTGAGAAATGTGCTGGGCCATTTTGTAACAACACATATAAATACAGAGATTCTAGAACTAATCTCCCTCTTTGCAGTCTTCAATGCTACCGTGCTATGCATACTGTGTAACTTACTGTCTCTTCCCATCAGTGATGGATAATTTATTGCTATG

Ace file of the UniGene sp_v3.0_unigene68718

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana] dbj\|BAC42342.1\| unknown protein [Arabidopsis thaliana] gb\|AEE33398.1\| HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]	-	-	6.0e-15	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%

Source	Gene names
Sma3	At1g56460; At1g56460/F13N6_4; At3g06660; F3E22.21; GSVIVT00022598001; GSVIVT00028124001; GSVIVT00033131001; LOC_Os03g59680; LOC_Os12g37430; OSJNBb0033J23.10; Os03g0811500; Os12g0561200; OsI_14023; OsJ_13069; OsJ_36510; PHYPADRAFT_165644; POPTRDRAFT_564395

Source	GOs	Term	Type	e value	Identity
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	0.0	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	PAPA-1-like conserved region	IPR006880	-	-
Sma3	Zinc finger, HIT-type	IPR007529	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56460.2	" HIT zinc finger ;PAPA-1-like conserved region chr1:21146765-21149468 FORWARD LENGTH=532"	9.0e-20	73%
RefSeq	Arabidopsis thaliana	NP_176041.2	HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]	1.0e-19	73%
RefSeq	Populus trichocarpa	XP_002338965.1	predicted protein [Populus trichocarpa]	3.0e-23	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS52

Fln msg: your sequence is shorter than subject: 60 - 407

Fln protein: RRDLGCHSGLPSIFNNPCRYPPPREKCAGPFCNNTYKYRDSRTNLPLCSLQCYRAMHTV*

Protein Length: 61

Fln nts: GCGTCGTGACCTTGGCTGTCACTCAGGGCTTCCAAGCATATTCAATAACCCATGCAGGTATCCTCCGCCTCGTGAGAAATGTGCTGGGCCATTTTGTAACAACACATATAAATACAGAGATTCTAGAACTAATCTCCCTCTTTGCAGTCTTCAATGCTACCGTGCTATGCATACTGTGTAA___CTTACTGTCTCTTCCCATCAGTGATGGATAATTTATTGCTATG

Fln Alignment:

GG46A6U01CMTPO___IFNN-PCRYPPPREKCAGPFCNNTYKYRDSRTNLPLCSLQCYRAMHTV*LTVSSH
C0PS52_______________IFNSVPCRYPPAREKCAGPSCNNTYKYRDSKSNLPLCSLLCYRAIHDMAQPLSTH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain