SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68717

Length: 310 nt

UniGene Fasta

>sp_v3.0_unigene68717
CGTCGTGACCTTGGCTGTCACTCAGGAGTTTGATATACAATATTCTTCCCCATAACTGATAATACTGTACTTTGAAATGGCGAGAGGAGATACTGTGTGCGTGACAGGAGCCAGTGGTTTTATTGGATCTTGGGTGGTCCGCTTGCTTTTGGAAGATGGCTATAAAGTTCATGCTACTGTGCAAAATTTGGAAGACAGAAATGAAACNGACCATCTGAAGGCAATGGCAGCAGAATTAGGAGCGAGGGAAAGGTTAAGGTTGTTTCAAGTAGATTTGTTGAATTATGAGAGTCTTGCAGCGGCCATTAAT

Ace file of the UniGene sp_v3.0_unigene68717

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cinnamoyl-CoA reductase n=1 Tax=Camellia oleifera RepID=C3VPA5_9ERIC	-	-	2.0e-19	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Cinnamoyl CoA reductase	-	-	1.846e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cinnamoyl-CoA reductase.	EC:1.2.1.44	-	3.179e-21	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940	3.179e-21	%
Sma3	Biosynthesis of phenylpropanoids	01061	3.179e-21	%
Sma3	Metabolic pathways	01100	3.179e-21	%
Sma3	Biosynthesis of secondary metabolites	01110	3.179e-21	%

Source	Gene names
Sma3	At1g09500; At5g58490; B1088C09.13; CCR; CCR1; CCR2; CCR3; CCR4; CCR5; CCR6; F14J9.14; F14J9.16; GSVIVT00024039001; GSVIVT00033763001; LOC_Os03g60380; OJ1352_A10.23; OJ1754_E06.1; OSJNBa0029G06.7; OSJNBa0091M20.3; OSJNBa0094J08.6; Os03g0818200; Os06g062360

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	3-beta-hydroxy-delta5-steroid dehydrogenase activity	GO:0003854	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	cinnamoyl-CoA reductase activity	GO:0016621	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	steroid biosynthetic process	GO:0006694	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G58490.1	NAD(P)-binding Rossmann-fold superfamily protein chr5:23643068-23644455 FORWARD LENGTH=324	2.0e-21	58%
RefSeq	Arabidopsis thaliana	NP_200657.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	3.0e-21	58%
RefSeq	Populus trichocarpa	XP_002313227.1	predicted protein [Populus trichocarpa]	1.0e-24	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU33

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 78 - 322

Fln protein: MARGDTVCVTGASGFIGSWVVRLLLEDGYKVHATVQNLEDRNETDHLKAMAAELGARERLRLFQVDLLNYESLAAAIN

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAGTTTGATATACAATATTCTTCCCCATAACTGATAATACTGTACTTTGAA_-_ATGGCGAGAGGAGATACTGTGTGCGTGACAGGAGCCAGTGGTTTTATTGGATCTTGGGTGGTCCGCTTGCTTTTGGAAGATGGCTATAAAGTTCATGCTACTGTGCAAAATTTGGAAGACAGAAATGAAACaGACCATCTGAAGGCAATGGCAGCAGAATTAGGAGCGAGGGAAAGGTTAAGGTTGTTTCAAGTAGATTTGTTGAATTATGAGAGTCTTGCAGCGGCCATTAAT

Fln Alignment:

GG46A6U01DNATT___MARGDTVCVTGASGFIGSWVVRLLLEDGYKVHATVQNLEDRNETDHLKAMAAELGARERLRLFQVDLLNYESLAAAIN
A9NU33_______________MGSKETVCVTGASGFIGSWIVRLLLERGYSVQGTVQDLGNEKETKHLEAME---GAKERLKLFQMDLLDYGSIEAAIN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain