SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68643

Length: 183 nt

UniGene Fasta

>sp_v3.0_unigene68643
CGTCGTGACCTTGGCTGTCACTCATTCCTCCAAGCGAAGAGCTTCCTTTAACTGAAAGCTTCCCAGGGAGTGGAGGTCTTATTGCAGCTGCTAAAGAAGGTCGTTTAGACAAGGAAGCGGTTAACAGGTTTTTTGTTACTTTGATCAAGAGAAGATATTTTCCAGAGGATCTACCAGTGCAGC

Ace file of the UniGene sp_v3.0_unigene68643

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab family protein	-	-	4.0e-09	76%
FL-Next	sp=Uncharacterized GTP-binding protein At5g64813; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Sma3	GTP-binding protein, putative, expressed	-	-	1.901e-08	-

Source	Gene names
Sma3	At5g09910; At5g64813; GSVIVT00005416001; GSVIVT00019381001; LOC_Os03g13860; LOC_Os10g04580; MXK3.3; OSJNBa0013J21.21; Os03g0242200; Os10g0135200; OsI_10708; OsI_32675; OsJ_10098; OsJ_30642; POPTRDRAFT_650824; POPTRDRAFT_832291; RCOM_0425560; VITISV_035973

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	transcription factor binding	GO:0008134	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	circadian regulation of gene expression	GO:0032922	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Mitochondrial Rho-like	IPR013684	-	-
Sma3		IPR013753	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64813.1	LIP1 Ras-related small GTP-binding family protein chr5:25910836-25912625 FORWARD LENGTH=342	9.0e-13	71%
RefSeq	Arabidopsis thaliana	NP_568996.1	Ras-related small GTP-binding family protein [Arabidopsis thaliana]	1.0e-12	71%
RefSeq	Populus trichocarpa	XP_002310606.1	predicted protein [Populus trichocarpa]	2.0e-13	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5J9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 98 aas, your sequence is shorter than subject: 60 - 342

Fln protein: S*PWLSLIPPSEELPLTESFPGSGGLIAAAKEGRLDKEAVNRFFVTLIKRRYFPEDLPVQ

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCTCCAAGCGAAGAGCTTCCTTTAACTGAAAGCTTCCCAGGGAGTGGAGGTCTTATTGCAGCTGCTAAAGAAGGTCGTTTAGACAAGGAAGCGGTTAACAGGTTTTTTGTTACTTTGATCAAGAGAAGATATTTTCCAGAGGATCTACCAGTGCAGC

Fln Alignment:

GG46A6U01DY3D9___FPGSGGLIAAAKEGRLDKEAVNRFFVTLIKRRYFPEDLP
Q9C5J9_______________FPGNGGLIAAAKETRYDKEALNKFFRMLIRRRYFSDELP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain