SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68534

Length: 175 nt

UniGene Fasta

>sp_v3.0_unigene68534
CGTCGTGACCTTGGCTGTCACTCATTTACCTGCTCTTCATGTTCCTGACCTTTACCTACTGTACATTTTATGGAATGATGGCTATTGGACTGACACCTTCTCAGCAGCTAGCAGCTGTAGTGTCATCTGCCTTTTATTCAATATGGAATCTTTTAGCACCGGCTTTCTTATCCCC

Ace file of the UniGene sp_v3.0_unigene68534

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9SI18_RICCO	-	-	5.0e-15	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Gene names
Sma3	At2g29940; F23F1.14; GSVIVT00024107001; LOC_Os01g42350; LOC_Os01g42370; LOC_Os10g13830; OSJNBb0048O22.8; Os01g0609000; Os01g0609200; Os10g0205500; OsI_02806; OsI_02808; OsI_33011; OsJ_02558; OsJ_02559; OsJ_31016; P0410E03.5; P0410E03.7; PDR1; PDR10; PDR11

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G29940.1	PDR3, ATPDR3 pleiotropic drug resistance 3 chr2:12760139-12766455 FORWARD LENGTH=1426	1.0e-19	78%
RefSeq	Arabidopsis thaliana	NP_180555.2	ABC transporter G family member 31 [Arabidopsis thaliana]	2.0e-19	78%
RefSeq	Populus trichocarpa	XP_002299812.1	predicted protein [Populus trichocarpa]	3.0e-19	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 91 aas, your sequence is shorter than subject: 57 - 412

Fln protein: S*PWLSLIYLLFMFLTFTYCTFYGMMAIGLTPSQQLAAVVSSAFYSIWNLLAPAFLS

Protein Length: 58

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTACCTGCTCTTCATGTTCCTGACCTTTACCTACTGTACATTTTATGGAATGATGGCTATTGGACTGACACCTTCTCAGCAGCTAGCAGCTGTAGTGTCATCTGCCTTTTATTCAATATGGAATCTTTTAGCACCGGCTTTCTTATCCCC

Fln Alignment:

GG46A6U01ESG1T___YLLFMFLTFTYCTFYGMMAIGLTPSQQLAAVVSSAFYSIWNLLA
D5ACV1_______________FLFYMFMCFVYFTLYGMMAVALTPGHQIAAIVSSFFYGFWNIFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain