SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68378

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene68378
CGTCGTGACCTTGGCTGTCACTCAGGTTGAAAATCATGCTGCGGCTCCTATTCTGGCAAACCGTGCAGCATCACAAAATGTCTCACTATATGAGCTACTAAATAGAACTTTAAAAACAATGGCACATGATTTACAAGCCCCATTTATTGCCTCTTTGTCAAAGGATTTACATGTGCTTCCAGACTTCCACGGCAACAGGAACAATACTTGTGTATTAGCGGGGGTGGTTACGAGGTCCCTAGAAGTGGAGTAAACAGATTGTAATTTGGATTGATACACTTTTTGCATGTGGAGGACTCTCCAAAAATTCTTTGTATGTTCAAGAGCATGCAGACATCA

Ace file of the UniGene sp_v3.0_unigene68378

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FGGY family of carbohydrate kinase [Arabidopsis thaliana] gb\|AEE85751.1\| FGGY family of carbohydrate kinase [Arabidopsis thaliana]	-	-	1.0e-16	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	Gene names
Sma3	AT4G30310; AT4g30310; At4g30310; GSVIVT00031422001; Os02g0177900; OsJ_05603; P0504A05.27-1;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate kinase, FGGY	IPR000577	-	-
Sma3	Carbohydrate kinase, FGGY-related	IPR006003	-	-
Sma3	Carbohydrate kinase, FGGY, N-terminal	IPR018484	-	-
Sma3	Carbohydrate kinase, FGGY, C-terminal	IPR018485	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G30310.2	-	4.0e-21	66%
RefSeq	Arabidopsis thaliana	NP_849474.1	FGGY family of carbohydrate kinase [Arabidopsis thaliana]	2.0e-21	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK74

Fln msg: Separated hits, possible frame ERROR between 202 and 270, Distance to subject end: 84 aas, your sequence is shorter than subject: 113 - 575

Fln protein: VVTLAVTQVENHAAAPILANRAASQNVSLYELLNRTLKTMAHDLQAPFIASLSKDLHVLPDFHGNRxxxxxxxxxxxxxxxxxxxxxxxxIDTLFACGGLSKNSLYVQEHADI

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTGAAAATCATGCTGCGGCTCCTATTCTGGCAAACCGTGCAGCATCACAAAATGTCTCACTATATGAGCTACTAAATAGAACTTTAAAAACAATGGCACATGATTTACAAGCCCCATTTATTGCCTCTTTGTCAAAGGATTTACATGTGCTTCCAGACTTCCACGGCAACAGGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATTGATACACTTTTTGCATGTGGAGGACTCTCCAAAAATTCTTTGTATGTTCAAGAGCATGCAGACATCA

Fln Alignment:

GG46A6U01DUQAX___VENHAAAPILANRAASQNVSLYELLNRTLKTMAHDLQAPFIASLSKDLHVLPDFHGNRNxxxxxxxxxxxxxxxxxxxxxxxIDTLFACGGLSKNSLYVQEHADI
B8LK74_______________VENHAAAPILANRAASQNVSLYELLNRTLETMAHDLQVPFVASLSKDLHVLPDFHGNRSxxxxxxxxxxxxxxxxxxxxxxxIDTLFACGGLSKNSLYVQEHADI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain