SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68233

Length: 368 nt

UniGene Fasta

>sp_v3.0_unigene68233
TGTATCGACCTTGGCTGTCACTCAAACTGTTGACCCTTACAATACATTCTACTTGTTGAATCCAAGTGGAGACCTTGGTAGCACACAGGCTGCATTTGAGGATTGGTTTAAGAATCAGAAAGGCTGGGAGGGTAAAATGGGAGTTGTTCCTTCTCCAGACGAGTGCATTTCAGCTCTTCAAAAACATGACCTGTTTATCTATTTTGGACATGGCAGTGGAGAACAGTATCTTTCTGGAAGGAATATAAGAAGACTGGATCATTGTGCTGCTGCTGTTCTTATGGGATGCAGCAGTGGTAGGTCTTTCTTGTAGAGGGGATTATGAACCTGTTGGGGTCCCGTTGTCATATATAATAGCTGGATGTCCT

Ace file of the UniGene sp_v3.0_unigene68233

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidase C50, separase [Medicago truncatula]	-	-	2.0e-26	55%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	69%

Source	Gene names
Sma3	AT4g22970; At4g22970; CHLREDRAFT_12539; ESP1; F7H19.150; GSVIVT00014236001; GSVIVT00026602001; MtrDRAFT_AC157375g23v1; OJ1353_F08.3; Os02g0770700; OsI_09098; OsJ_08535; PHYPADRAFT_161712; POPTRDRAFT_756563; RCOM_1374500;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	endosperm development	GO:0009960	Biological Process	-
Sma3	positive regulation of sister chromatid cohesion	GO:0045876	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-
Sma3	meiotic chromosome separation	GO:0051307	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Peptidase C50, separase	IPR005314	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G22970.1	RSW4, AESP, ESP homolog of separase chr4:12033703-12043572 REVERSE LENGTH=2180	2.0e-30	54%
RefSeq	Arabidopsis thaliana	NP_001190804.1	separase [Arabidopsis thaliana]	3.0e-30	54%
RefSeq	Populus trichocarpa	XP_002303175.1	predicted protein [Populus trichocarpa]	2.0e-31	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RY57

Fln msg: Separated hits, possible frame ERROR between 301 and 306, Distance to subject end: 124 aas, your sequence is shorter than subject: 123 - 2426

Fln protein: VSTLAVTQTVDPYNTFYLLNPSGDLGSTQAAFEDWFKNQKGWEGKMGVVPSPDECISALQKHDLFIYFGHGSGEQYLSGRNIRRLDHCAAAVLMGCSSGxxxSCRGDYEPVGVPLSYIIAGCP

Protein Length: 124

Fln nts: TGTATCGACCTTGGCTGTCACTCAAACTGTTGACCCTTACAATACATTCTACTTGTTGAATCCAAGTGGAGACCTTGGTAGCACACAGGCTGCATTTGAGGATTGGTTTAAGAATCAGAAAGGCTGGGAGGGTAAAATGGGAGTTGTTCCTTCTCCAGACGAGTGCATTTCAGCTCTTCAAAAACATGACCTGTTTATCTATTTTGGACATGGCAGTGGAGAACAGTATCTTTCTGGAAGGAATATAAGAAGACTGGATCATTGTGCTGCTGCTGTTCTTATGGGATGCAGCAGTGGTAGxxxxxxTTCTTGTAGAGGGGATTATGAACCTGTTGGGGTCCCGTTGTCATATATAATAGCTGGATGTCCT

Fln Alignment:

GG46A6U01D4D4I___VDPYNTFYLLNPSGDLGSTQAAFEDWFKNQKGWEGKMGVVPSPDECISALQKHDLFIYFGHGSGEQYLSGRNIRRLDHCAAAVLMGCSSGRxxSCRGDYEPVGVPLSYIIAGCP
A9RY57_______________VNPYNTYYVLNPSGDLAKTQEAFEVWFKENIGWEGKVGQVPTIDEYVAGLQKHDLYTYLGHGSGEQYLPERFVRRLDRCAASLLMGCSSGRxxSPRGDYEPVGVPLSFLMAGCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain