SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68202

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene68202
CGTCGTGACCTTGGCTGTCACTCATGTCTAATTCTTTTTGGAATATTTGGTCAGATCGAATACATGCAGTAAAACTATGCCACGTTCCCTTGGATACGAGGAAAAAGATTCTCAAACATTGGCTTCATGGGGGATAGACTATTTGAAATACGATAACTACTATAATGGTGGCATAAATGCTCAGGACAGGGGTGACCAGAATCCTGCAACATGGGCATCCAAGATTGC

Ace file of the UniGene sp_v3.0_unigene68202

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Alpha-galactosidase; AltName: Full=Alpha-D-galactoside galactohydrolase; AltName: Full=Melibiase; Flags: Precursor gb\|AAA33022.1\| alpha-galactosidase [Coffea arabica]	-	-	1.0e-11	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Gene names
Sma3	OSJNBb0062P14.111; Os07g0452100; OsJ_24103;

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	0.0	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G08370.1	AtAGAL2, AGAL2 alpha-galactosidase 2 chr5:2691116-2693441 REVERSE LENGTH=396	5.0e-15	45%
RefSeq	Arabidopsis thaliana	NP_001031855.1	alpha-galactosidase 2 [Arabidopsis thaliana]	5.0e-15	45%
RefSeq	Populus trichocarpa	XP_002314831.1	predicted protein [Populus trichocarpa]	3.0e-18	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWB1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 189 aas, your sequence is shorter than subject: 75 - 396

Fln protein: VVTLAVTHV*FFLEYLVRSNTCSKTMPRSLGYEEKDSQTLASWGIDYLKYDNYYNGGINAQDRGDQNPATWASKI

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCTAATTCTTTTTGGAATATTTGGTCAGATCGAATACATGCAGTAAAACTATGCCACGTTCCCTTGGATACGAGGAAAAAGATTCTCAAACATTGGCTTCATGGGGGATAGACTATTTGAAATACGATAACTACTATAATGGTGGCATAAATGCTCAGGACAGGGGTGACCAGAATCCTGCAACATGGGCATCCAAGATTGC

Fln Alignment:

GG46A6U01DQGIF___SNTCSKTMPRSLGYEEKDSQTLASWGIDYLKYDNYYNGGINAQDR----------------------GDQNPATWASKI
A9NWB1_______________SNTCSKTMPGSLGHEDQDARTFASWGIDYLKYDNCFNGGTSPQERYPKMSEALRNAGRLIFYSMCEWGDQNPATWAPKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain