UniGene Name: sp_v3.0_unigene68123
Length: 182 nt
UniGene Fasta |
---|
>sp_v3.0_unigene68123
C |
Ace file of the UniGene sp_v3.0_unigene68123 |
---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
Annotations |
---|
Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | TIR1/AFB auxin receptor protein PintaTIR1 n=1 Tax=Pinus taeda RepID=C9EHS7_PINTA | - | - | 5.0e-22 | 100% |
FL-Next | tr=TIR1/AFB auxin receptor protein PintaTIR1; Pinus taeda (Loblolly pine). | - | - | 0.0 | 100% |
Sma3 | TRANSPORT INHIBITOR RESPONSE 1 protein, putative | - | - | 5.595e-08 | - |
Source | Gene names |
---|---|
Sma3 | AFB2; AFB3; At1g12820; At3g26810; At3g62980; F13K23.7; FBL1; FBL3; FBL4; GSVIVT00006948001; GSVIVT00023591001; GSVIVT00035495001; GSVIVT00037929001; GSVIVT00038095001; LOC_Os04g32460; LOC_Os11g31620; LRF2; MDJ14.12; OSJNBa0072K14.18; Os04g0395600; Os11g05 |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | SCF ubiquitin ligase complex | GO:0019005 | Cellular Component | 0.0 | - |
Sma3 | protein kinase activity | GO:0004672 | Molecular Function | 0.0 | - |
Sma3 | ubiquitin-protein ligase activity | GO:0004842 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | auxin binding | GO:0010011 | Molecular Function | 0.0 | - |
Sma3 | response to molecule of bacterial origin | GO:0002237 | Biological Process | 0.0 | - |
Sma3 | protein phosphorylation | GO:0006468 | Biological Process | 0.0 | - |
Sma3 | defense response | GO:0006952 | Biological Process | 0.0 | - |
Sma3 | cell cycle | GO:0007049 | Biological Process | 0.0 | - |
Sma3 | auxin mediated signaling pathway | GO:0009734 | Biological Process | 0.0 | - |
Sma3 | ethylene mediated signaling pathway | GO:0009873 | Biological Process | 0.0 | - |
Sma3 | pollen maturation | GO:0010152 | Biological Process | 0.0 | - |
Sma3 | lateral root formation | GO:0010311 | Biological Process | 0.0 | - |
Sma3 | cellular response to phosphate starvation | GO:0016036 | Biological Process | 0.0 | - |
Sma3 | modification-dependent protein catabolic process | GO:0019941 | Biological Process | 0.0 | - |
Sma3 | stamen development | GO:0048443 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Protein kinase, catalytic domain | IPR000719 | - | 0.0 | - |
Sma3 | Leucine-rich repeat | IPR001611 | - | 0.0 | - |
Sma3 | F-box domain, cyclin-like | IPR001810 | - | 0.0 | - |
Sma3 | Protein kinase, ATP binding site | IPR017441 | - | 0.0 | - |
Sma3 | IPR017442 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT1G12820.1 | AFB3 auxin signaling F-box 3 chr1:4368879-4370780 REVERSE LENGTH=577 | 1.0e-17 | 69% |
RefSeq | Arabidopsis thaliana | NP_563915.1 | auxin signaling F-box 3 protein [Arabidopsis thaliana] | 2.0e-17 | 69% |
RefSeq | Populus trichocarpa | XP_002328871.1 | f-box family protein [Populus trichocarpa] | 1.0e-17 | 69% |
Full-Lengther Next Prediction |
---|
Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: C9EHS7
Fln msg: Distance to subject end: 345 aas, your sequence is shorter than subject: 60 - 574
Fln protein:
V
Protein Length:
61
Fln nts:
C
Fln Alignment:
GG46A6U01D7QB4___CFPDSCTSLVSLNFACLTKEVNFEALERLVARCTSLRSLKLNRLVPLELLHR
C9EHS7_______________CFPDSCTSLVSLNFACLTKEVNFEALERLVARCTSLRSLKLNRLVPLELLHR
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain