SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68116

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene68116
CGTCGTGACCTTGGCTGTCACTCAGATATGTACAGAGCTCTGTAAAGAAGAGGCGAACAATCTTTTTTTCGTTGGAATCAACCATGGAGAAGGAAGAAGCATTGATAGGATCAATTGATCAGGGCACCACAAGCACTAGATTCATCATCTATGATCAATATGCAAAAGTTGTTGCTGCTCATCAAGTTGAATTCACACAGATCTGTCCTCAAGGCCGGGTGGGTT

Ace file of the UniGene sp_v3.0_unigene68116

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycerol kinase n=1 Tax=Arabidopsis thaliana RepID=F4HS76_ARATH	-	-	4.0e-09	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Glycerol kinase	-	-	3.906e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.1.3-	-	2.79e-08	-

Source	Gene names
Sma3	AT1G80460; At1g80460; GK; GLR1; GSVIVT00003297001; PHYPADRAFT_127293; POPTRDRAFT_810168; T21F11.21; VITISV_037711;

Source	GOs	Term	Type	Identity
Sma3	glycerol kinase activity	GO:0004370	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	glycerol-3-phosphate metabolic process	GO:0006072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate kinase, FGGY	IPR000577	-	-
Sma3	Glycerol kinase	IPR005999	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Carbohydrate kinase, FGGY, N-terminal	IPR018484	-	-
Sma3	Carbohydrate kinase, FGGY, C-terminal	IPR018485	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80460.1	NHO1, GLI1 Actin-like ATPase superfamily protein chr1:30246960-30249055 REVERSE LENGTH=522	3.0e-13	72%
RefSeq	Arabidopsis thaliana	NP_001031307.1	glycerol kinase [Arabidopsis thaliana]	3.0e-13	72%
RefSeq	Populus trichocarpa	XP_002327412.1	predicted protein [Populus trichocarpa]	1.0e-12	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV89

Fln msg: Distance to subject end: 483 aas, your sequence is shorter than subject: 47 - 534

Fln protein: MEKEEALIGSIDQGTTSTRFIIYDQYAKVVAAHQVEFTQICPQGRVG

Protein Length: 48

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATATGTACAGAGCTCTGTAAAGAAGAGGCGAACAATCTTTTTTTCGTTGGAATCAACC_-_ATGGAGAAGGAAGAAGCATTGATAGGATCAATTGATCAGGGCACCACAAGCACTAGATTCATCATCTATGATCAATATGCAAAAGTTGTTGCTGCTCATCAAGTTGAATTCACACAGATCTGTCCTCAAGGCCGGGTGGGTT

Fln Alignment:

GG46A6U01B9JMS___LESTMEKEEALIGSIDQGTTSTRFIIYDQYAKVVAAHQVEFTQICPQ
A9NV89_______________MESTMEKEEALIGSIDQGTTSTRFIIYDQSAKVVAAHQVEFTQICPQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain