SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67867

Length: 269 nt

UniGene Fasta

>sp_v3.0_unigene67867
CGTCGTGACCTTGGCTGTCACTCATTTGATTTAGAAAGAAATTGGTACTACAATTTCTCAGATGGCAGTTCAAATGGACGATCCTCAAAGTTTAGCCAGATTATTGACTGATGCATTGAGTCAAGATGAGAATTTACGTAATCCCGCAGAGGCAGCTTTATCAGAATATGAAAGTAGGTCAGGTTTCGGCTCGTGCTTATTGGAGATAATTTCTGCAAAGGACTTGGAGAATCAATCCAATGTACGGTGGATGGCTTCTGTCTATTTCA

Ace file of the UniGene sp_v3.0_unigene67867

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	64%

Source	Gene names
Sma3	GSVIVT00038854001; PHYPADRAFT_136021; PHYPADRAFT_152314; POPTRDRAFT_777866;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus, docking	GO:0000059	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Exportin-1/Importin-beta-like	IPR013598	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G08960.1	ARM repeat superfamily protein chr3:2730405-2736762 REVERSE LENGTH=1010	2.0e-15	53%
RefSeq	Arabidopsis thaliana	NP_187508.5	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	3.0e-15	53%
RefSeq	Populus trichocarpa	XP_002323597.1	predicted protein [Populus trichocarpa]	3.0e-17	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9TXK6

Fln msg: Distance to subject end: 667 aas, your sequence is shorter than subject: 69 - 737

Fln protein: MAVQMDDPQSLARLLTDALSQDENLRNPAEAALSEYESRSGFGSCLLEIISAKDLENQSNVRWMASVYF

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGATTTAGAAAGAAATTGGTACTACAATTTCTCAG_-_ATGGCAGTTCAAATGGACGATCCTCAAAGTTTAGCCAGATTATTGACTGATGCATTGAGTCAAGATGAGAATTTACGTAATCCCGCAGAGGCAGCTTTATCAGAATATGAAAGTAGGTCAGGTTTCGGCTCGTGCTTATTGGAGATAATTTCTGCAAAGGACTTGGAGAATCAATCCAATGTACGGTGGATGGCTTCTGTCTATTTCA

Fln Alignment:

GG46A6U01BNQUE___DDPQSLARLLTDALSQDENLRNPAEAALSEYESRSGFGSCLLEIISAKDLENQSNVRWMASVYF
A9TXK6_______________DDLSRVYTLLRDALSQDESVRKPAEATLAACENRPGFCSCLLEIIGAKDLGQQSDARWLASVYF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain