SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67817

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene67817
CGTCGTGACCTTGGCTGTCACTCAAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAGGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAACATTCTGATGCTAAACGTAGATGATCTTGACATACTCTGGGATTCTAAGGAACGGT

Ace file of the UniGene sp_v3.0_unigene67817

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PTEN_C2 domain containing protein	-	-	6.0e-18	37%
FL-Next	sp=Formin-like protein 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%

Source	Gene names
Sma3	At1g31810; At2g25050; At5g07740/At5g07750; At5g58160; F27C12.3; F5M6.18; FH13; FH14; FH18; FH20; FH3; FH6; GSVIVT00003176001; GSVIVT00016289001; GSVIVT00032770001; LOC_Os08g17820; LOC_Os10g02980; MBK20.20/MBK20.21; MCK7.3; OJ1003_E05.5-1; OSJNAa0079B05.2;

Source	GOs	Term	Type	Identity
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	cellular component organization	GO:0016043	Biological Process	-
Sma3	actin cytoskeleton organization	GO:0030036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Actin-binding FH2	IPR015425	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G31810.1	AFH14 Formin Homology 14 chr1:11399922-11405761 REVERSE LENGTH=1230	4.0e-23	78%
RefSeq	Arabidopsis thaliana	NP_174461.3	formin-like protein 14 [Arabidopsis thaliana]	5.0e-23	78%
RefSeq	Populus trichocarpa	XP_002303470.1	predicted protein [Populus trichocarpa]	2.0e-25	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C6S1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 905 aas, your sequence is shorter than subject: 59 - 1230

Fln protein: S*PWLSLKGDVVLECIHLETDPEREVMMFRVMFNTAFIRSNILMLNVDDLDILWDSKER

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAGGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAACATTCTGATGCTAAACGTAGATGATCTTGACATACTCTGGGATTCTAAGGAACGGT

Fln Alignment:

GG46A6U01EBWWX___LKGDVVLECIHLETDPEREVMMFRVMFNTAFIRSNILMLNVDDLDILWDSKE
Q9C6S1_______________VQGDVVLECVHMDLDPEREVMMFRVMFNTAFIRSNILMLNSDNLDILWEAKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain