SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67804

Length: 175 nt

UniGene Fasta

>sp_v3.0_unigene67804
GCATTATGAGTTCGTAGTTTTACTCTTTGCACTGACAAATGCCCCTGGTGTTTTCATGAGTTTGATGAATGGAATATTTCGGGATTACTTAGAAAAGTTTGTACAAGTCTTTATCGATGACGTTTTGATCTACTCAAAGACCCCAGAAGAGCATGACGAACACTTGAGGATAGTT

Ace file of the UniGene sp_v3.0_unigene67804

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-pol polyprotein n=1 Tax=Solanum lycopersicum RepID=E6Y5Q2_SOLLC	-	-	5.0e-18	74%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	46%
Sma3	Reverse transcriptase	-	-	0.0	-

Source	Gene names
Sma3	AT4g03650; AT4g03840; AT4g10580; At2g04670; At2g06470; At2g07660; At2g10780; F5K24.9; F9D12.11; H0207B04.5; H0502G05.12; H0613A10.2; H0616A11.3; LOC_Os03g04860; LOC_Os03g23110; LOC_Os03g23780; LOC_Os03g36239; LOC_Os03g41700; LOC_Os03g42950; LOC_Os03g59810

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 58 - 142

Fln protein: HYEFVVLLFALTNAPGVFMSLMNGIFRDYLEKFVQVFIDDVLIYSKTPEEHDEHLRIV

Protein Length: 59

Fln nts: GCATTATGAGTTCGTAGTTTTACTCTTTGCACTGACAAATGCCCCTGGTGTTTTCATGAGTTTGATGAATGGAATATTTCGGGATTACTTAGAAAAGTTTGTACAAGTCTTTATCGATGACGTTTTGATCTACTCAAAGACCCCAGAAGAGCATGACGAACACTTGAGGATAGTT

Fln Alignment:

GG46A6U01BPOTN___YEFVVLLFALTNAPGVFMSLMNGIFRDYLEKFVQVFIDDVL---IYSKTPEEHDEHLRIV
P31843_______________FEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIKHLRVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain