SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67786

Length: 191 nt

UniGene Fasta

>sp_v3.0_unigene67786
CGTCGTGACCTTGGCTGTCACTCAGATTGGATGGGTGGTAGGGCCAGTTGTTATCATAGGTTTTTCAGTTGTGACATATTATACTTCACTTTTACTTGCAGACTGTTATCGTTCACCAGACCCAGTTACTGGACAGCGTAACTATACATACAAGGATGCTGTCAAAGCCAATCTGGGTGGTGCACAAGTAA

Ace file of the UniGene sp_v3.0_unigene67786

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	amino acid transporter [Solanum lycopersicum]	-	-	2.0e-12	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Amino acid permease	-	-	2.7e-27	-

Source	Gene names
Sma3	AAP1; AAP2; AAP3; AAP4; AAP5; AAP6; AAPA; At1g44100; At1g77380; At5g49630; At5g63850; B1065E10.27; B1370C05.25; F2P24.9; GSVIVT00007991001; GSVIVT00015029001; GSVIVT00015436001; GSVIVT00019304001; GSVIVT00019314001; GSVIVT00022007001; GSVIVT00032098001; G

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	acidic amino acid transmembrane transporter activity	GO:0015172	Molecular Function	-
Sma3	neutral amino acid transmembrane transporter activity	GO:0015175	Molecular Function	-
Sma3	basic amino acid transport	GO:0015802	Biological Process	-
Sma3	aspartate transport	GO:0015810	Biological Process	-
Sma3	tryptophan transport	GO:0015827	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G58360.1	AAP1, NAT2 amino acid permease 1 chr1:21676623-21680313 FORWARD LENGTH=485	2.0e-15	67%
RefSeq	Arabidopsis thaliana	NP_176132.1	amino acid permease 1 [Arabidopsis thaliana]	3.0e-15	67%
RefSeq	Populus trichocarpa	XP_002333631.1	amino acid permease [Populus trichocarpa]	4.0e-16	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7Z1

Fln msg: Distance to subject end: 363 aas, your sequence is shorter than subject: 63 - 508

Fln protein: VVTLAVTQIGWVVGPVVIIGFSVVTYYTSLLLADCYRSPDPVTGQRNYTYKDAVKANLGGAQV

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTGGATGGGTGGTAGGGCCAGTTGTTATCATAGGTTTTTCAGTTGTGACATATTATACTTCACTTTTACTTGCAGACTGTTATCGTTCACCAGACCCAGTTACTGGACAGCGTAACTATACATACAAGGATGCTGTCAAAGCCAATCTGGGTGGTGCACAAGTAA

Fln Alignment:

GG46A6U01CAA5R___FSVVTYYTSLLLADCYRSPDPVTGQRNYTYKDAVKANLGGAQV
D5A7Z1_______________FSFVTYYTSMLLADTYRSPDPVTGRRNYTYTDAVTAILGGKRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain