SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67774

Length: 202 nt

UniGene Fasta

>sp_v3.0_unigene67774
CGTCGTGACCTTGGCTGTCACTCAGTTGTATCCTGGACGGCAATAATTGCAGGGCATGCACAGAATGGTCTGGCGTTTGAGGCTCTCAAAATATTCCAGGACATGCAACTGGCAGGTATAAAGCCAAATGCAAAGACCTTTGCCGGTGTTCTCCCTGCATATGCCAACCTGGCAGCTCTGGATCAAGGTAAAGNGATCCATC

Ace file of the UniGene sp_v3.0_unigene67774

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LNU6.2\|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230 gb\|AEE29953.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	8.0e-12	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20230.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:7009570-7011852 FORWARD LENGTH=760	5.0e-16	56%
RefSeq	Arabidopsis thaliana	NP_173449.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	6.0e-16	56%
RefSeq	Populus trichocarpa	XP_002317794.1	predicted protein [Populus trichocarpa]	1.0e-14	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 349 aas, your sequence is shorter than subject: 67 - 795

Fln protein: RRDLGCHSVVSWTAIIAGHAQNGLAFEALKIFQDMQLAGIKPNAKTFAGVLPAYANLAALDQGKEIH

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGTATCCTGGACGGCAATAATTGCAGGGCATGCACAGAATGGTCTGGCGTTTGAGGCTCTCAAAATATTCCAGGACATGCAACTGGCAGGTATAAAGCCAAATGCAAAGACCTTTGCCGGTGTTCTCCCTGCATATGCCAACCTGGCAGCTCTGGATCAAGGTAAAGaGATCCATC

Fln Alignment:

GG46A6U01BPLSH___SVVSWTAIIAGHAQNGLAFEALKIFQDMQLAGIKPNAKTFAGVLPAYANLAALDQGKEIH
B8LQA8_______________NVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain