SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67601

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene67601
CGTCGTGACCTTGGCTGTCACTCATGATTCTAGTAGATGGAAAGATCTTAACCCTAAATTTGTCCTACAAGTTTACAGAGACATGGTTGCAACTGGTGACAAATCATTTGCCCATGCTGTTTGGGCCCTCTGTCTATATTGCCATGGCTTACATGGATCAGTTTGACAAAGATAAAGACGGAATGATAGAAAATGAAGGTTTCCCAGATCAAACATATGATGCATGGTCTGTTTCAGGT

Ace file of the UniGene sp_v3.0_unigene67601

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-lysosomal glucosylceramidase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9N0G5_POPTR	-	-	9.0e-27	89%
FL-Next	sp=Non-lysosomal glucosylceramidase; subsp. trichocarpa).	-	-	0.0	79%
Sma3	At5g49900	-	-	5.817e-09	-

Source	Gene names
Sma3	AT4g10060; AT5G49900; At1g33700; At5g49900; F14M2.16; GSVIVT00021808001; GSVIVT00035303001; LOC_Os11g13810; Os07g0444000; Os08g0111200; Os11g0242100; OsI_25831; OsI_34005; OsI_35656; OsJ_24071; OsJ_25789; OsJ_33494; P0007D08.40; P0498H04.1; PHYPADRAFT_122

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	glucosylceramidase activity	GO:0004348	Molecular Function	-
Sma3	sphingolipid metabolic process	GO:0006665	Biological Process	-
Sma3	glucosylceramide catabolic process	GO:0006680	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Glucosylceramidase	IPR006775	-	-
Sma3	Beta-glucosidase, GBA2 type	IPR014551	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49900.1	Beta-glucosidase, GBA2 type family protein chr5:20297235-20302019 REVERSE LENGTH=957	2.0e-28	86%
RefSeq	Arabidopsis thaliana	NP_199801.2	Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]	2.0e-28	86%
RefSeq	Populus trichocarpa	XP_002328722.1	predicted protein, partial [Populus trichocarpa]	4.0e-29	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9N7A1

Fln msg: Separated hits, possible frame ERROR between 124 and 126, Distance to subject end: 263 aas, your sequence is shorter than subject: 80 - 948

Fln protein: VVTLAVTHDSSRWKDLNPKFVLQVYRDMVATGDKSFAHAVxxPSVYIAMAYMDQFDKDKDGMIENEGFPDQTYDAWSVSG

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGATTCTAGTAGATGGAAAGATCTTAACCCTAAATTTGTCCTACAAGTTTACAGAGACATGGTTGCAACTGGTGACAAATCATTTGCCCATGCTGTTTGxxxGCCCTCTGTCTATATTGCCATGGCTTACATGGATCAGTTTGACAAAGATAAAGACGGAATGATAGAAAATGAAGGTTTCCCAGATCAAACATATGATGCATGGTCTGTTTCAGGT

Fln Alignment:

GG46A6U01DBXRP___HDSSRWKDLNPKFVLQVYRDMVATGDKSFAHAVWxPSVYIAMAYMDQFDKDKDGMIENEGFPDQTYDAWSVSG
B9N7A1_______________HNTDRWKDLNPKFVLQVYRDVIATGDKKFARAVWxPSVYVAMAYMDQFDRDGDGMIENDGFPDQTYDTWSLSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain