SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67300

Length: 218 nt

UniGene Fasta

>sp_v3.0_unigene67300
CGTCGTGACCTTGGCTGTCACTCATTGTTTATCCATTCTTTGTAGGAGATCGATCACATCCACAATCTGAAGAAATCTATGCAATGTTGGAGAACTTGTCCAAGCAGATGAAAGAGGCAGGTTATGTACCCAACACTCGCTTTGTGTTGCATGATTTGCAAGACGATGAAAAAGAGTGTGCCCTCTACAGTCACAGTGAAAAGCTAGCCATTGCTTTT

Ace file of the UniGene sp_v3.0_unigene67300

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Sma3	Pentatricopeptide repeat protein	-	-	-

Source	Gene names
Sma3	At3g49140; B1032F05.19; F2K15.2; GSVIVT00003060001; GSVIVT00003383001; GSVIVT00004068001; GSVIVT00006467001; GSVIVT00008457001; GSVIVT00020655001; GSVIVT00021586001; GSVIVT00021587001; GSVIVT00026498001; GSVIVT00030099001; GSVIVT00030510001; GSVIVT0003260

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49142.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18215788-18217848 REVERSE LENGTH=686	2.0e-19	58%
RefSeq	Arabidopsis thaliana	NP_001190038.1	tetratricopeptide repeat-like family protein [Arabidopsis thaliana]	3.0e-19	58%
RefSeq	Populus trichocarpa	XP_002321443.1	predicted protein [Populus trichocarpa]	2.0e-19	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 60 aas, your sequence is shorter than subject: 72 - 210

Fln protein: S*PWLSLIVYPFFVGDRSHPQSEEIYAMLENLSKQMKEAGYVPNTRFVLHDLQDDEKECALYSHSEKLAIAF

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTTATCCATTCTTTGTAGGAGATCGATCACATCCACAATCTGAAGAAATCTATGCAATGTTGGAGAACTTGTCCAAGCAGATGAAAGAGGCAGGTTATGTACCCAACACTCGCTTTGTGTTGCATGATTTGCAAGACGATGAAAAAGAGTGTGCCCTCTACAGTCACAGTGAAAAGCTAGCCATTGCTTTT

Fln Alignment:

GG46A6U01AJIIH___IVYPFFVGDRSHPQSEEIYAMLENLSKQMKEAGYVPNTRFVLHDLQDDEKECALYSHSEKLAIAF
D5AAH8_______________MVHTFSVGDISHPQIEDIYAMLDKLAGQMKTAGHVPNTNFALHDVDDEQKERTLYHHSEKLAIAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain