SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67215

Length: 338 nt

UniGene Fasta

>sp_v3.0_unigene67215
CGTCGTGACCTTGGCTGTCACTCACTGGGAAATCTAGCAAACCTCCAGAAAATAGATTTGACAAATGCTTCCAGTTTGCAGATGCTTCCAAGTTCTTTTGGGAACCTTGCTGGACTGCAATACCTATTTCTGAGAGGTTGCTCAAATTTGACCATTTCCAACGAAACATTTGGAAATATTAGCACCCTGAAAGAGTTAGATCTCAAAGGTTGTAGCAATGTGAGGGAATTGCCTCCCCAAGTGGCACATCAACGGTTCTTGGTACAGTTGGATGTGTCTGGACCATGTTTAAGAGGGTTGAAATGCTTGCCCGATTCTGGACTGTTGACTCGGTTGAT

Ace file of the UniGene sp_v3.0_unigene67215

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	4.0e-15	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G44510.1	TAO1 target of AVRB operation1 chr5:17929673-17934188 REVERSE LENGTH=1187	3.0e-17	48%
RefSeq	Arabidopsis thaliana	NP_199264.1	target of AVRB operation1 protein [Arabidopsis thaliana]	3.0e-17	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP91

Fln msg: Distance to subject end: 445 aas, your sequence is shorter than subject: 112 - 583

Fln protein: RRDLGCHSLGNLANLQKIDLTNASSLQMLPSSFGNLAGLQYLFLRGCSNLTISNETFGNISTLKELDLKGCSNVRELPPQVAHQRFLVQLDVSGPCLRGLKCLPDSGLLTRL

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTGGGAAATCTAGCAAACCTCCAGAAAATAGATTTGACAAATGCTTCCAGTTTGCAGATGCTTCCAAGTTCTTTTGGGAACCTTGCTGGACTGCAATACCTATTTCTGAGAGGTTGCTCAAATTTGACCATTTCCAACGAAACATTTGGAAATATTAGCACCCTGAAAGAGTTAGATCTCAAAGGTTGTAGCAATGTGAGGGAATTGCCTCCCCAAGTGGCACATCAACGGTTCTTGGTACAGTTGGATGTGTCTGGACCATGTTTAAGAGGGTTGAAATGCTTGCCCGATTCTGGACTGTTGACTCGGTTGAT

Fln Alignment:

GG46A6U01CI2FK___HSLGNLANLQKIDLTNASSLQMLPSSFGNLAGLQYLFLRGCSNLTISNETFGNISTLKELDLKGCSNVRELPPQVAHQRFLVQLDVSGPCLRGLKCLPDSGLLTRL
B8LP91_______________NSFGNLTNLQYLNFYGCSRMETLPHSFGSLIRLKHLCLKGCSQLTLLGRTLGNIRTLESLDLSDCQKMEVLPPQVTHQWSLEKLFLWNTKLKDLP--SDIGNLSNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain