SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67138

Length: 321 nt

UniGene Fasta

>sp_v3.0_unigene67138
CGTCGTGACCTTGGCTGTCACTCAATGGTCGAATTTTTCTGGCGAACCCAGATTTGCCTAGAAGATTTGAGCTAAATGCCCCTCTCAACAAGTACAACAGGAGCACTTTTTACCTATCTGATCCTGTAGTTGGCTACACAGACTATCCATTCCTGGAGTGAACTGTCCATGGATATAAACTTCAATCACATCTTCCACAAAATACACCCTTCTTCAACAACCACAGTACCTCAAACCAGTAAGAAAGGTACCTGTATTTTCAGTAGTTGTTCCCGTATCGTAGTATATACGGTGAGTATGTAAGGCAGGGCATGTTTAGCC

Ace file of the UniGene sp_v3.0_unigene67138

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	12-oxophytodienoate reductase opr, putative n=1 Tax=Ricinus communis RepID=B9SKA1_RICCO	-	-	9.0e-18	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	12-oxo-phytodienoic acid reductase	-	-	2.89e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	12-oxophytodienoate reductase.	EC:1.3.1.42	-	4.735e-33	-

Source	KEGGs	Term	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592	4.735e-33	%
Sma3	Biosynthesis of plant hormones	01070	4.735e-33	%
Sma3	Metabolic pathways	01100	4.735e-33	%

Source	Gene names
Sma3	AT2G06050; At1g76680; At1g76690; At2g06050; CROYEH; DDE1; F28O16.5; F28O16.6; GSVIVT00002893001; GSVIVT00021891001; GSVIVT00021908001; GSVIVT00021909001; GSVIVT00021911001; GSVIVT00021914001; GSVIVT00021916001; GSVIVT00021918001; GSVIVT00021920001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	12-oxophytodienoate reductase activity	GO:0016629	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76690.1	OPR2, ATOPR2 12-oxophytodienoate reductase 2 chr1:28778976-28780355 FORWARD LENGTH=374	2.0e-20	84%
RefSeq	Arabidopsis thaliana	NP_177795.1	12-oxophytodienoate reductase 2 [Arabidopsis thaliana]	2.0e-20	84%
RefSeq	Populus trichocarpa	XP_002336741.1	predicted protein, partial [Populus trichocarpa]	5.0e-22	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P127

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 53 - 376

Fln protein: S*PWLSLNGRIFLANPDLPRRFELNAPLNKYNRSTFYLSDPVVGYTDYPFLE*

Protein Length: 54

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGTCGAATTTTTCTGGCGAACCCAGATTTGCCTAGAAGATTTGAGCTAAATGCCCCTCTCAACAAGTACAACAGGAGCACTTTTTACCTATCTGATCCTGTAGTTGGCTACACAGACTATCCATTCCTGGAGTGA___ACTGTCCATGGATATAAACTTCAATCACATCTTCCACAAAATACACCCTTCTTCAACAACCACAGTACCTCAAACCAGTAAGAAAGGTACCTGTATTTTCAGTAGTTGTTCCCGTATCGTAGTATATACGGTGAGTATGTAAGGCAGGGCATGTTTAGCC

Fln Alignment:

GG46A6U01ER8EI___LSLNGRIFLANPDLPRRFELNAPLNKYNRSTFYLSDPVVGYTDYPFLE
A9P127_______________LVVYGRIFLANPDLPKRFELNAPLNKYDRNTFYSPDPVVGYTDYPFLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain