SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67086

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene67086
CGTCGTGACCTTGGCTGTCACTCATTAGATTGAAGGAAGGTTGCCATATTAATTGCAGCTTGCTTACCCTGGGCACTATGATCACAAAGCTCAGTGAAACAATAAAACTAGGAATGGTCACATTCCATACCGAGATTCTAAACTCACCCGAATTCTTCAACATGCATTGGGAGGCAATGCAAGGCATCAATGATATGTACGTTGAGTCCTGCACGAAGCTATGTTGAACGGTCACGAAAT

Ace file of the UniGene sp_v3.0_unigene67086

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding microtubule motor family protein [Arabidopsis thaliana] gb\|AEE84858.1\| ATP binding microtubule motor family protein [Arabidopsis thaliana]	-	-	5.0e-17	82%
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	83%
Sma3	Putative kinesin heavy chain	-	-	1.502e-15	-

Source	Gene names
Sma3	AT4g24170; At1g18370; At2g21300; At4g24170; AtNACK1; CHLREDRAFT_99147; GSVIVT00014496001; GSVIVT00014990001; GSVIVT00017728001; KIN1; KIN2; OJ1282_H11.24; OJ1439_F07.32; OSJNBa0011L07.1; OSJNBa0091D06.23; Os01g0513900; Os02g0644400; Os02g0645100; Os04g053

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Ribosome-associated, YjgA	IPR006839	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24170.1	ATP binding microtubule motor family protein chr4:12543206-12546805 FORWARD LENGTH=1004	3.0e-19	82%
RefSeq	Arabidopsis thaliana	NP_567695.1	ATP binding microtubule motor family protein [Arabidopsis thaliana]	4.0e-19	82%
RefSeq	Populus trichocarpa	XP_002301999.1	predicted protein [Populus trichocarpa]	7.0e-19	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1J049

Fln msg: Separated hits, possible frame ERROR between 98 and 101, and overlapping frame ERROR between 184 and 166, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 596 aas, your sequence is shorter than subject: 80 - 940

Fln protein: S*PWLSLIRLKEGCHINCSLLTLGTMITKLSxxNKTRNGHIPYRDSKLTRILQxxxxxxxxxSMICTLSPARSYVERSRN

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTAGATTGAAGGAAGGTTGCCATATTAATTGCAGCTTGCTTACCCTGGGCACTATGATCACAAAGCTCAGTGAxxxCAATAAAACTAGGAATGGTCACATTCCATACCGAGATTCTAAACTCACCCGAATTCTTCAACAxxxxxxxxxxxxxxxxxxxxxxxxATCAATGATATGTACGTTGAGTCCTGCACGAAGCTATGTTGAACGGTCACGAAAT

Fln Alignment:

GG46A6U01DSFIO___RLKEGCHINCSLLTLGTMITKLSExNKTRNGHIPYRDSKLTRILQHAxxxxxxASMICTLSPARSYVERSRN
I1J049_______________RLKEGCHINRSLLTLGTVIRKLSKxSKVRNGHIPYRDSKLTRILQPSxxxxxxTAIICTMSPARSYMEQSRN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain