SustainPineDB

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Assembly info
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66981

Length: 231 nt

UniGene Fasta

>sp_v3.0_unigene66981
CGTCGTGACCTTGGCTGTCACTCACTCTACATGACATTCCTCTGACTGGATTTGTCAATTCACTTACTTTTGCACGGTCTGGGCGCTTTCTTATTGCTGGAGTTGGGCAGGAACCTCGACTGGGTAGATGGGGCCGTATTCAGGCTGCTCGCAATNGGTGCCACTTTATGCCCAATTGANCTTTCATGATGGATTTTGGGGGTCAAAACAAGTCTACAAGATGATGGTATA

Ace file of the UniGene sp_v3.0_unigene66981

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	79%

Source	Gene names
Sma3	At4g05410; At4g21130; GSVIVT00028413001; OSTLU_3069; PHYPADRAFT_221323; PHYPADRAFT_22356; POPTRDRAFT_217089; POPTRDRAFT_558393; VITISV_042496;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G21130.1	EMB2271 Transducin/WD40 repeat-like superfamily protein chr4:11274308-11276286 FORWARD LENGTH=479	2.0e-16	67%
RefSeq	Arabidopsis thaliana	NP_193845.2	U3-55K-like protein 2 [Arabidopsis thaliana]	3.0e-16	67%
RefSeq	Populus trichocarpa	XP_002306239.1	predicted protein [Populus trichocarpa]	2.0e-17	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9H467

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 59 - 502

Fln protein: S*PWLSLTLHDIPLTGFVNSLTFARSGRFLIAGVGQEPRLGRWGRIQAARNRCHFMPN*

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCTACATGACATTCCTCTGACTGGATTTGTCAATTCACTTACTTTTGCACGGTCTGGGCGCTTTCTTATTGCTGGAGTTGGGCAGGAACCTCGACTGGGTAGATGGGGCCGTATTCAGGCTGCTCGCAATaGGTGCCACTTTATGCCCAATTGA___cCTTTCATGATGGATTTTGGGGGTCAAAACAAGTCTACAAGATGATGGTATA

Fln Alignment:

GG46A6U01DUP18___LHDIPLTGFVNSLTFARSGRFLIAGVGQEPRLGRWGRIQAARN
B9H467_______________LYDLPLTGFVNSLAFAKSGKFLLAGVGQEPRLGRWGHNSAARN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain