SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66898

Length: 307 nt

UniGene Fasta

>sp_v3.0_unigene66898
CGTCGTGACCTTGGCTGTCACTCAGTAGATAGTGCCGAAAGAGCGCTAGAAGTCTTGGGGTTTCATAAAGAGCAGTCGACATGTGCGACCACTAACGAATGACGGTCTATGATCTGCTGAAGAAAGTCAAGGTAAAATAAGATCACAGAAAAGCTGTCGTCCTTCCTTTGTCAGCACCTGAAGATATTATGAATCCATTTTTTCCAGGAAACCAAATGTCTGAAGGAAATTCCTGTTGTGATAATATCTTCAGAAAATGTGCCGCAGAGAATAACAAGCTGTCTGGCAGAAGGAGCAAAAGATTTTA

Ace file of the UniGene sp_v3.0_unigene66898

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aberrant phyllotaxy1 [Zea mays] dbj\|BAB17300.1\| response regulator [Zea mays]	-	-	1.0e-05	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%

Source	GOs	Term	Type	Identity
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWL1

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 102 - 208

Fln protein: RRDLGCHSVDSAERALEVLGFHKEQSTCATTNE*RSMIC*RKSR*NKITEKLSSFLCQHLKIL*IHFFQETKCLKEIPVVIISSENVPQRITSCLAEGAKDF

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAGATAGTGCCGAAAGAGCGCTAGAAGTCTTGGGGTTTCATAAAGAGCAGTCGACATGTGCGACCACTAACGAATGACGGTCTATGATCTGCTGAAGAAAGTCAAGGTAAAATAAGATCACAGAAAAGCTGTCGTCCTTCCTTTGTCAGCACCTGAAGATATTATGAATCCATTTTTTCCAGGAAACCAAATGTCTGAAGGAAATTCCTGTTGTGATAATATCTTCAGAAAATGTGCCGCAGAGAATAACAAGCTGTCTGGCAGAAGGAGCAAAAGATTTTA

Fln Alignment:

GG46A6U01DOVBP___SVDSAERALEVLGFHKEQSTCATTNE*R-SMIC*RKSR*NKITEKLSSFLCQHLKIL*IHFFQETKCLKEIPVVIISSENVPQRITSCLAEGAKDF
A9NWL1_______________TVDSAERALEVLGFHEEQSTCAASNAFKVNMI---------ITDYCMPGMTGYDLLKKV---QETKCLKEIPVVIISSENVPQRITSCLAGGAKDF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain