SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66515

Length: 305 nt

UniGene Fasta

>sp_v3.0_unigene66515
CGTCGTGACCTTGGCTGTCACTTCCCATTTCCCCATTCAAGGGGGCGACCCTCAAGCCTCTGGTGCCTCAGAAGAAACAAAAACTGGAAAAATTCAAGATATCTGCAGTAAAAGCATCGCCGGATTATCTAGTTCTTGCTGTGGAATATGGACCAGCTGTACAATTTGTCAAGATAGATACCGATGAAGAGTATGCACTAGCCCAACAACTGCAAATCCGTGGACTTCCCACTATGGTCTTTATCAGTCCAGATTCTCAAAAGCCTGCAATTCGAACTGAAGGCCTTCTTCCTAATGAAACAATC

Ace file of the UniGene sp_v3.0_unigene66515

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9ST39_PHYPA	-	-	1.0e-13	66%
FL-Next	sp=Thioredoxin-like protein CITRX, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	54%
Sma3	Putative thioredoxin	-	-	3.859e-07	-

Source	Gene names
Sma3	At3g06730; CITRX2; F3E22.13; GSVIVT00030903001; OSTLU_37354; Ot04g02880; PHYPADRAFT_134919; PHYPADRAFT_37148; POPTRDRAFT_1065742;

Source	GOs	Term	Type	Identity
Sma3	nucleoid	GO:0009295	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR006662	-	-
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G06730.1	TRX P, TRX z Thioredoxin z chr3:2124276-2125845 FORWARD LENGTH=183	2.0e-16	61%
RefSeq	Arabidopsis thaliana	NP_187329.1	thioredoxin-like protein CITRX [Arabidopsis thaliana]	3.0e-16	61%
RefSeq	Populus trichocarpa	XP_002299198.1	predicted protein [Populus trichocarpa]	4.0e-18	64%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q8H2V6

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 101 - 189

Fln protein: S*PWLSLPISPFKGATLKPLVPQKKQKLEKFKISAVKASPDYLVLAVEYGPAVQFVKIDTDEEYALAQQLQIRGLPTMVFISPDSQKPAIRTEGLLPNETI

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTTCCCATTTCCCCATTCAAGGGGGCGACCCTCAAGCCTCTGGTGCCTCAGAAGAAACAAAAACTGGAAAAATTCAAGATATCTGCAGTAAAAGCATCGCCGGATTATCTAGTTCTTGCTGTGGAATATGGACCAGCTGTACAATTTGTCAAGATAGATACCGATGAAGAGTATGCACTAGCCCAACAACTGCAAATCCGTGGACTTCCCACTATGGTCTTTATCAGTCCAGATTCTCAAAAGCCTGCAATTCGAACTGAAGGCCTTCTTCCTAATGAAACAATC

Fln Alignment:

GG46A6U01D2AHU___VKASPDYLVLAVEYGPAVQFVKIDTDEEYALAQQLQIRGLPTMVFISPDSQKPAIRTEGLLPNETI
Q8H2V6_______________VLMAQDIEMLAVEYENNALFVKVDTDDEYELARDMQVRGLPTLYFFSPDQSKDALRTEGLIPIDMI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain