SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66329

Length: 429 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene66329
ACCAGGAATTTTTACCAATGAACAGATAAACGCCTGGAAACGAGTTGTTGACGCGGTACATATGAAGGGCGGCATAATTTTCTGTCAACTCTGGCACGTCGGGCGGGCATCGCATATGGGTGAATTCTTGTCCTTAAACTCGTATTCATTATGTGCTCCAAACATCCTTTCTTTTTCGTTTCAAGCACAACTAAATGATAATTACTTTCAGTGAACCATTTTCTCAACTAATTAATCCCAAATATGTTTGTTTGATATACAGTTTACCAACCCAAAGGAGATTTACCCGTTTCGTCGACGAGCACGAAGGTTTCAGACGAGTGGAAAATAAATATGTCGGACGGAACGTTAGGAAATTATTCAAACCCTAGAGCGCTTGAGGCCTCAGAGATACCGCCTTCGCAGTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene66329 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	12-oxophytodienoate reductase n=1 Tax=Hevea brasiliensis RepID=Q4ZJ73_HEVBR	-	-	3.0e-12	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	12-oxophytodienoate reductase opr, putative	-	-	1.223e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	12-oxophytodienoate reductase.	EC:1.3.1.42	-	1.111e-35	-

Source	KEGGs	Term	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592	1.111e-35	%
Sma3	Biosynthesis of plant hormones	01070	1.111e-35	%
Sma3	Metabolic pathways	01100	1.111e-35	%

Source	Gene names
Sma3	AT2G06050; At1g09400; At1g76680; At1g76690; At2g06050; DDE1; F14J9.6; F28O16.5; F28O16.6; GSVIVT00002893001; GSVIVT00002894001; GSVIVT00016458001; GSVIVT00021891001; GSVIVT00021908001; GSVIVT00021911001; GSVIVT00021917001; GSVIVT00021920001; LEDI-5a; LEDI

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	12-oxophytodienoate reductase activity	GO:0016629	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G06050.2	OPR3 oxophytodienoate-reductase 3 chr2:2359240-2361971 REVERSE LENGTH=391	2.0e-15	76%
RefSeq	Arabidopsis thaliana	NP_001077884.1	12-oxophytodienoate reductase 3 [Arabidopsis thaliana]	2.0e-15	76%
RefSeq	Populus trichocarpa	XP_002327288.1	predicted protein [Populus trichocarpa]	6.0e-17	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT17

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 150 aas, your sequence is shorter than subject: 71 - 376

Fln protein: PGIFTNEQINAWKRVVDAVHMKGGIIFCQLWHVGRASHMGEFLSLNSYSLCAPNILSFSFQAQLNDNYFQ*

Protein Length: 72

Fln nts: ACCAGGAATTTTTACCAATGAACAGATAAACGCCTGGAAACGAGTTGTTGACGCGGTACATATGAAGGGCGGCATAATTTTCTGTCAACTCTGGCACGTCGGGCGGGCATCGCATATGGGTGAATTCTTGTCCTTAAACTCGTATTCATTATGTGCTCCAAACATCCTTTCTTTTTCGTTTCAAGCACAACTAAATGATAATTACTTTCAGTGAACCATTTTCTCAACTAATTAATCCCAAATATGTTTGTTTGATATACAGTTTACCAACCCAAAGGAGATTTACCCGTTTCGTCGACGAGCACGAAGGTTTCAGACGAGTGGAAAATAAATATGTCGGACGGAACGTTAGGAAATTATTCAAACCCTAGAGCGCTTGAGGCCTCAGAGATACCGCCTTCGCAGTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

GG46A6U01D5HF6___PGIFTNEQINAWKRVVDAVHMKGGIIFCQLWHVGRASHM
A9NT17_______________PGIWTEEQVEAWKPIVNGVHEKGGVFFCQIWHTGRASHV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain