SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66297

Length: 123 nt

UniGene Fasta

>sp_v3.0_unigene66297
CGTCGTGATTGGCTGTCACTCATAAAATTTCTGGGAATCTACCCCCATCTTCATCCAACACCTCTTCAACTTGAAGAAGATTTGGAACAGCTAAAGGTGCTTGAAAATGGCTATAAGATGAAG

Ace file of the UniGene sp_v3.0_unigene66297

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CMP-KDO synthetase1 [Zea mays] emb\|CAB89846.1\| CMP-KDO synthetase [Zea mays]	-	-	2.0e-08	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Cmp-2-keto-3-deoctulosonate (Cmp-kdo) cytidyltransferase, putative	-	-	2.848e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	3-deoxy-manno-octulosonate cytidylyltransferase.	EC:2.7.7.38	-	3.908e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lipopolysaccharide biosynthesis	00540		3.908e-17	%
Sma3	Metabolic pathways	01100		3.908e-17	%

Source	Gene names
Sma3	AT1G53000; At1g53000; F14G24.28; GSVIVT00004067001; GSVIVT00008456001; GSVIVT00027664001; OJ1115_B06.12; Os05g0561500; OsI_20971; OsJ_19536; POPTRDRAFT_579474; POPTRDRAFT_771827; RCOM_0282830; RCOM_1632840; VITISV_008336; VITISV_036570; cks; kdo1;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	3-deoxy-manno-octulosonate cytidylyltransferase activity	GO:0008690	Molecular Function	-
Sma3	lipopolysaccharide biosynthetic process	GO:0009103	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Acylneuraminate cytidylyltransferase	IPR003329	-	0.0	-
Sma3	3-deoxy-D-manno-octulosonate cytidylyltransferase	IPR004528	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G53000.1	KDSB Nucleotide-diphospho-sugar transferases superfamily protein chr1:19745330-19747133 REVERSE LENGTH=290	7.0e-12	81%
RefSeq	Arabidopsis thaliana	NP_175708.2	3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [Arabidopsis thaliana]	1.0e-11	81%
RefSeq	Populus trichocarpa	XP_002316900.1	predicted protein [Populus trichocarpa]	7.0e-14	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQZ3

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 41 - 290

Fln protein: RRDWLSLIKFLGIYPHLHPTPLQLEEDLEQLKVLENGYKMK

Protein Length: 42

Fln nts: CGTCGTGATTGGCTGTCACTCATAAAATTTCTGGGAATCTACCCCCATCTTCATCCAACACCTCTTCAACTTGAAGAAGATTTGGAACAGCTAAAGGTGCTTGAAAATGGCTATAAGATGAAG

Fln Alignment:

GG46A6U01AHXSH___KFLGIYPHLHPTPLQLEEDLEQLKVLENGYKMK
A9NQZ3_______________KFLGIYPQLHPTPLQLEEDLEQLKVLENGYKMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain