SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66176

Length: 523 nt

UniGene Fasta

>sp_v3.0_unigene66176
CGTCGTGACCTTGGCTGTCACTCAACTTGATTTGTTTCGTCCACACATTGTTCAGTATAGCTGCCTGTGTTATGTCCGTGTCACTACTTTTATTCAATCATGGAAAGCATGGCCGGCAAATGTTTTTATCACCCACTTCAATCTGCTGTACCTCTAAATGAATCGAATACCAGATTAGCCTGGGTTCGGCCATCAAAGGTGTGCAGAATTAGAAATAACGTAAGCTTCAGCAAGATAGGTTTTGGTTCTGGTATTGGACGGCCTTTAAAGGCGCAGGTGCAGGCACAGGCATCTCTGTTTCCCTTCCTAAACAAGAGAAAAGACACAACTGTTGTGAAAGAGGAGCTGTTGGAAGCCATCGGACCATTGGACAGGGGGGCTGAAGCAACTCCCGAGGACAAGTACCGCGTCGATCAGGAACTAGAAGTGATTAATCCAACTAAAGGACCTCTTCAGTCTCCCTTGTTAAATGGAAAATGGGAGCTTTTGTACACTACTTCAGCGACTTTCGCAGTGAGTGACA

Ace file of the UniGene sp_v3.0_unigene66176

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Structural molecule, putative n=1 Tax=Ricinus communis RepID=B9SRI7_RICCO	-	-	2.0e-20	65%
FL-Next	sp=Probable plastid-lipid-associated protein 4, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%

Source	Gene names
Sma3	FIB3; GSVIVT00026576001; LOC_Os03g49720; MtrDRAFT_AC157375g30v1; OSJNBa0004L11.4; Os03g0704100; OsI_13198; OsJ_12270; POPTRDRAFT_1067428; POPTRDRAFT_852434; RCOM_1411250;

Source	GOs	Term	Type	e value	Identity
Sma3	structural molecule activity	GO:0005198	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein chr3:9526904-9528199 FORWARD LENGTH=242	6.0e-19	62%
RefSeq	Arabidopsis thaliana	NP_189236.3	putative plastid-lipid-associated protein 4 [Arabidopsis thaliana]	8.0e-19	62%
RefSeq	Populus trichocarpa	XP_002299674.1	predicted protein [Populus trichocarpa]	1.0e-23	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9LU85

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 141 - 242

Fln protein: MESMAGKCFYHPLQSAVPLNESNTRLAWVRPSKVCRIRNNVSFSKIGFGSGIGRPLKAQVQAQASLFPFLNKRKDTTVVKEELLEAIGPLDRGAEATPEDKYRVDQELEVINPTKGPLQSPLLNGKWELLYTTSATFAVSD

Protein Length: 142

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTGATTTGTTTCGTCCACACATTGTTCAGTATAGCTGCCTGTGTTATGTCCGTGTCACTACTTTTATTCAATC_-_ATGGAAAGCATGGCCGGCAAATGTTTTTATCACCCACTTCAATCTGCTGTACCTCTAAATGAATCGAATACCAGATTAGCCTGGGTTCGGCCATCAAAGGTGTGCAGAATTAGAAATAACGTAAGCTTCAGCAAGATAGGTTTTGGTTCTGGTATTGGACGGCCTTTAAAGGCGCAGGTGCAGGCACAGGCATCTCTGTTTCCCTTCCTAAACAAGAGAAAAGACACAACTGTTGTGAAAGAGGAGCTGTTGGAAGCCATCGGACCATTGGACAGGGGGGCTGAAGCAACTCCCGAGGACAAGTACCGCGTCGATCAGGAACTAGAAGTGATTAATCCAACTAAAGGACCTCTTCAGTCTCCCTTGTTAAATGGAAAATGGGAGCTTTTGTACACTACTTCAGCGACTTTCGCAGTGAGTGACA

Fln Alignment:

GG46A6U01BW2U8___VKEELLEAIGPLDRGAEATPEDKYRVDQ---ELEVINPTKGPLQSPLLNGKWELLYTTSAT
Q9LU85_______________LKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNPTKEPLKSDLVNGKWELIYTTSAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain