SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66066

Length: 396 nt

UniGene Fasta

>sp_v3.0_unigene66066
CGTCGTGACCTTGGCTGTCACTCAATTGTCTAAGGGTGGCTTTCAAGTAAGACGGGTTCATGACTGCCAATTTTTTTGGGCCAGCCATATATCTTGTGAAGAATCCCAATGCTTTTGTCATAGGTTTCCTCAACAAGTAACCATGCTCATTGGAAATGCTTCTTCCTTGTTACTGATATGTTCAGTTTTGTGATGTTTTTGGATGGATTGATTCATGGGATTGCATTTATAGTATGCAGGCTAATTTGTGATAGAAATTTTCTGATATTGTTTTAAATATTGGATTTGTGAGCTACAAAATGCGGGATTCTAATCCCCCACTCCAATACAGGCACAATCATGGCCTATTGTTATGCAAAATTCGGACATAGTAACCATTTCCAAAAAGTCTTTAGT

Ace file of the UniGene sp_v3.0_unigene66066

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	P72 DEAD box protein [Pisum sativum]	-	-	6.0e-06	71%
FL-Next	Isoform 3 of DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200	-	-	0.0	65%

Source	Gene names
Sma3	PHYPADRAFT_107194; PHYPADRAFT_180402;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5VQL1-3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 478 aas, your sequence is shorter than subject: 131 - 707

Fln protein: VVTLAVTQLSKGGFQVRRVHDCQFFWASHISCEESQCFCHRFPQQVTMLIGNASSLLLICSVL*CFWMD*FMGLHL*YAG*FVIEIF*YCFKYWICELQNAGF*SPTPIQAQSWPIVMQNSDIVTISKKSL

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTCTAAGGGTGGCTTTCAAGTAAGACGGGTTCATGACTGCCAATTTTTTTGGGCCAGCCATATATCTTGTGAAGAATCCCAATGCTTTTGTCATAGGTTTCCTCAACAAGTAACCATGCTCATTGGAAATGCTTCTTCCTTGTTACTGATATGTTCAGTTTTGTGATGTTTTTGGATGGATTGATTCATGGGATTGCATTTATAGTATGCAGGCTAATTTGTGATAGAAATTTTCTGATATTGTTTTAAATATTGGATTTGTGAGCTACAAAATGCGGGATTCTAATCCCCCACTCCAATACAGGCACAATCATGGCCTATTGTTATGCAAAATTCGGACATAGTAACCATTTCCAAAAAGTCTTTAGT

Fln Alignment:

GG46A6U01A38ON___ELQNAGF*SPTPIQAQSWPIVMQNSDIVTISK
Q5VQL1-3_____________EVQQAGFSAPTPIQAQSWPIALRNRDIVAVAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain