SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66021

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene66021
CGTCGTGACCTTGGCTGTCACTCATCTCATCTTCAATTTTCATAAGGCCTATTATATATTAGATGAACTTCTTGATTGGTCCGGGGAGCTCCAAGAGTCAAGTAAGAAGACGGTTGCACGTGTCATAGCTGCACAGGATTCTCTTGTGGAGAGTGCAAAAGAACAGGCTAGTTCTTTGAGCAATATCATTGCTCAAGCAACCAAATAGAACCATGTTGTC

Ace file of the UniGene sp_v3.0_unigene66021

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP-1 Golgi-related complex component; clathrin coated vesicles; clathrin assembly protein [Camptotheca acuminata]	-	-	1.0e-19	88%
FL-Next	sp=AP-1 complex subunit sigma-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	85%
Sma3	Clathrin coat assembly protein ap19, putative	-	-	5.596e-09	-

Source	Gene names
Sma3	AAP19-1; AAP19-2; AP1S1; AP1s1; AT4g35410; At2g17380; At4g35410; At4g35410/F23E12_30; CHLREDRAFT_184165; F23E12.30; GSVIVT00002691001; GSVIVT00037672001; LOC_Os03g57040; LOC_Os03g59660; MICPUCDRAFT_50404; MICPUN_108582; OSJNBb0033J23.8; OSJNBb0093E13.11;

Source	GOs	Term	Type	Identity
Sma3	clathrin coat of trans-Golgi network vesicle	GO:0030130	Cellular Component	-
Sma3	clathrin adaptor complex	GO:0030131	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Clathrin adaptor complex, small chain	IPR000804	-	-
Sma3		IPR015604	-	-
Sma3	Adaptor protein complex, sigma subunit	IPR016635	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G17380.1	AP19 associated protein 19 chr2:7553122-7554887 FORWARD LENGTH=161	6.0e-26	85%
RefSeq	Arabidopsis thaliana	NP_565415.1	AP-1 complex subunit sigma-1 [Arabidopsis thaliana]	8.0e-26	85%
RefSeq	Populus trichocarpa	XP_002318532.1	predicted protein [Populus trichocarpa]	5.0e-27	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8LEZ8

Fln msg: your sequence is shorter than subject: 69 - 161

Fln protein: VVTLAVTHLIFNFHKAYYILDELLDWSGELQESSKKTVARVIAAQDSLVESAKEQASSLSNIIAQATK*

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCATCTTCAATTTTCATAAGGCCTATTATATATTAGATGAACTTCTTGATTGGTCCGGGGAGCTCCAAGAGTCAAGTAAGAAGACGGTTGCACGTGTCATAGCTGCACAGGATTCTCTTGTGGAGAGTGCAAAAGAACAGGCTAGTTCTTTGAGCAATATCATTGCTCAAGCAACCAAATAG___AACCATGTTGTC

Fln Alignment:

GG46A6U01B6ZD3___LIFNFHKAYYILDELLDWSGELQESSKKTVARVIAAQDSLVESAKEQASSLSNIIAQATK
Q8LEZ8_______________LIFNFHKAYYILDELLI-AGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain