SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65726

Length: 140 nt

UniGene Fasta

>sp_v3.0_unigene65726
GAAGAGGGATGGACAACCTTACAAATGACTAGAGAAACGACAATGCTAGACTTTGGCAGACGACAGTTATCTGCAAGAGAACTCATGGGCATCTTATCTGAGATGTGGCCTGCTGCTGCTGATCAAGTTGGAAAGATCAG

Ace file of the UniGene sp_v3.0_unigene65726

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	GUCT	IPR012562	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKW8

Fln msg: Distance to subject end: 167 aas, your sequence is shorter than subject: 46 - 802

Fln protein: EEGWTTLQMTRETTMLDFGRRQLSARELMGILSEMWPAAADQVGKI

Protein Length: 47

Fln nts: GAAGAGGGATGGACAACCTTACAAATGACTAGAGAAACGACAATGCTAGACTTTGGCAGACGACAGTTATCTGCAAGAGAACTCATGGGCATCTTATCTGAGATGTGGCCTGCTGCTGCTGATCAAGTTGGAAAGATCAG

Fln Alignment:

GFXCM5X02I2494___EEGWTTLQMTRETTMLDFGRRQLSARELMGILSEMWPAAADQVGKI
B8LKW8_______________EEGWTTLQMTRESTMPD-GRQQLNARELMGILSEMWPAAADKVGKI

SSRs (tot: 1)

Start position	End position	Sequence	Length
110	121	CTG CTG CTG CTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain