SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65608

Length: 172 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene65608
CAGCACCTTGTGTCCTTTTTTTTGATGAGCTTGATTCGATTGCTACCCAGCGTGGTAGTAGTGCGGGAGATGCTGGGGGTGCGGCAGACAGAGTTTTGAATCAGTTGCTGACTGAAAAGATAGGGATGGCATGTCTGCCAAGAAAACTGTTTTCATTATTGGAGCTACGAAT

Ace file of the UniGene sp_v3.0_unigene65608 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cell division cycle protein 48 homolog; AltName: Full=Valosin-containing protein homolog; Short=VCP gb\|AAA80587.1\| valosin-containing protein [Glycine max] gb\|ABC87759.1\| plamsma membrane-associated AAA-ATPase [Glycine max]	-	-	1.0e-10	67%
FL-Next	sp=Cell division cycle protein 48 homolog; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	90%
Sma3	Cell division cycle protein 48 homolog	-	-	6.813e-12	-

Source	Gene names
Sma3	AT3G09840; At3g09840; At3g53230; At5g03340; CAFP; CDC48; CDC48A; CDC48D; CDC48E; CHLREDRAFT_134171; F12E4_70; GSVIVT00016023001; GSVIVT00023232001; LOC_Os03g05730; LOC_Os10g30580; MICPUCDRAFT_31832; MICPUN_77437; OSJNBa0007M04.24; OSTLU_29008; Os03g015180

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53230.1	ATPase, AAA-type, CDC48 protein chr3:19723416-19726489 FORWARD LENGTH=815	2.0e-12	90%
RefSeq	Arabidopsis thaliana	NP_190891.1	cell division control protein 48-D [Arabidopsis thaliana]	3.0e-12	90%
RefSeq	Populus trichocarpa	XP_002326365.1	predicted protein [Populus trichocarpa]	9.0e-13	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P54774

Fln msg: Overlapping hits, possible frame ERROR between 131 and 119, Distance to subject end: 179 aas, your sequence is shorter than subject: 57 - 807

Fln protein: APCVLFFDELDSIATQRGSSAGDAGGAADRVLNQLLTExxxxxxSAKKTVFIIGATN

Protein Length: 58

Fln nts: CAGCACCTTGTGTCCTTTTTTTTGATGAGCTTGATTCGATTGCTACCCAGCGTGGTAGTAGTGCGGGAGATGCTGGGGGTGCGGCAGACAGAGTTTTGAATCAGTTGCTGACTGAAxxxxxxxxxxxxxxxxxxTCTGCCAAGAAAACTGTTTTCATTATTGGAGCTACGAAT

Fln Alignment:

GFXCM5X02G1VSW___APCVLFFDELDSIATQRXXXXXXXXXXXDRVLNQLLTxxxxxxAKKTVFIIGATN
P54774_______________APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTxxxxxxAKKTVFIIGATN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain