UniGene Name: sp_v3.0_unigene65608
Length: 172 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
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>sp_v3.0_unigene65608
C |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | RecName: Full=Cell division cycle protein 48 homolog; AltName: Full=Valosin-containing protein homolog; Short=VCP gb|AAA80587.1| valosin-containing protein [Glycine max] gb|ABC87759.1| plamsma membrane-associated AAA-ATPase [Glycine max] | - | - | 1.0e-10 | 67% |
FL-Next | sp=Cell division cycle protein 48 homolog; Glycine max (Soybean) (Glycine hispida). | - | - | 0.0 | 90% |
Sma3 | Cell division cycle protein 48 homolog | - | - | 6.813e-12 | - |
Source | Gene names |
---|---|
Sma3 | AT3G09840; At3g09840; At3g53230; At5g03340; CAFP; CDC48; CDC48A; CDC48D; CDC48E; CHLREDRAFT_134171; F12E4_70; GSVIVT00016023001; GSVIVT00023232001; LOC_Os03g05730; LOC_Os10g30580; MICPUCDRAFT_31832; MICPUN_77437; OSJNBa0007M04.24; OSTLU_29008; Os03g015180 |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | nucleolus | GO:0005730 | Cellular Component | 0.0 | - |
Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | cytoskeleton | GO:0005856 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | flagellum | GO:0019861 | Cellular Component | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | nucleoside-triphosphatase activity | GO:0017111 | Molecular Function | 0.0 | - |
Sma3 | ATPase activity, uncoupled | GO:0042624 | Molecular Function | 0.0 | - |
Sma3 | cell cycle | GO:0007049 | Biological Process | 0.0 | - |
Sma3 | protein transport | GO:0015031 | Biological Process | 0.0 | - |
Sma3 | response to cadmium ion | GO:0046686 | Biological Process | 0.0 | - |
Sma3 | cell division | GO:0051301 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Peptidase S8/S53, subtilisin/kexin/sedolisin | IPR000209 | - | 0.0 | - |
Sma3 | CDC48, N-terminal subdomain | IPR003338 | - | 0.0 | - |
Sma3 | AAA+ ATPase domain | IPR003593 | - | 0.0 | - |
Sma3 | ATPase, AAA-type, core | IPR003959 | - | 0.0 | - |
Sma3 | ATPase, AAA-type, conserved site | IPR003960 | - | 0.0 | - |
Sma3 | CDC48, domain 2 | IPR004201 | - | 0.0 | - |
Sma3 | ATPase, AAA-type, CDC48 | IPR005938 | - | 0.0 | - |
Sma3 | Aspartate decarboxylase-like fold | IPR009010 | - | 0.0 | - |
Sma3 | TonB box, conserved site | IPR010916 | - | 0.0 | - |
Sma3 | Vps4 oligomerisation, C-terminal | IPR015415 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT3G53230.1 | ATPase, AAA-type, CDC48 protein chr3:19723416-19726489 FORWARD LENGTH=815 | 2.0e-12 | 90% |
RefSeq | Arabidopsis thaliana | NP_190891.1 | cell division control protein 48-D [Arabidopsis thaliana] | 3.0e-12 | 90% |
RefSeq | Populus trichocarpa | XP_002326365.1 | predicted protein [Populus trichocarpa] | 9.0e-13 | 90% |
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Fln status: Internal
Fln database: sp_plants
Fln subject: P54774
Fln msg: Overlapping hits, possible frame ERROR between 131 and 119, Distance to subject end: 179 aas, your sequence is shorter than subject: 57 - 807
Fln protein:
A
Protein Length:
58
Fln nts:
C
Fln Alignment:
GFXCM5X02G1VSW___APCVLFFDELDSIATQRXXXXXXXXXXXDRVLNQLLTxxxxxxAKKTVFIIGATN
P54774_______________APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTxxxxxxAKKTVFIIGATN
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain