SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65546

Length: 205 nt

UniGene Fasta

>sp_v3.0_unigene65546
ATTTTAAGAGTGCACCAGTTTGAAAAAGTAGAGCAATTTTGCTTAACTAGCCCAAATCGGAAATGTTTTACTCTTGGGACATGCACGAGGAAATGATTAACAATTCTGAAGACTTCTACAAGGAGCTAAATATTCCCTATCAGATTGTATCAATTGTTTCTGGTGCTTTGAATGATGCTAGCTGCGAAGAAATATGTATTTGGAA

Ace file of the UniGene sp_v3.0_unigene65546

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative seryl-tRNA synthetase [Oryza sativa Japonica Group] dbj\|BAD87664.1\| putative seryl-tRNA synthetase [Oryza sativa Japonica Group] dbj\|BAG91593.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	3.0e-17	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Seryl-tRNA synthetase, putative	-	-	5.209e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Serine--tRNA ligase.	EC:6.1.1.11	-	1.096e-21	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		1.096e-21	%

Source	Gene names
Sma3	At5g27470; B1064G04.18-1; B1064G04.18-2; B1144D11.40-1; B1144D11.40-2; F21A20_180; GSVIVT00022843001; LOC_Os03g10190; Os01g0559100; Os03g0198400; OsI_02425; OsI_10395; OsJ_02228; OsJ_09790; POPTRDRAFT_562832; POPTRDRAFT_716082; RCOM_0867180; RCOM_0867210;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	serine-tRNA ligase activity	GO:0004828	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	seryl-tRNA aminoacylation	GO:0006434	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Seryl-tRNA synthetase, class IIa	IPR002317	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Seryl-tRNA synthetase, class IIa, N-terminal	IPR015866	-	-
Sma3		IPR018156	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G27470.1	seryl-tRNA synthetase / serine--tRNA ligase chr5:9695087-9697154 FORWARD LENGTH=451	2.0e-16	67%
RefSeq	Arabidopsis thaliana	NP_198099.1	seryl-tRNA synthetase [Arabidopsis thaliana]	2.0e-16	67%
RefSeq	Populus trichocarpa	XP_002306393.1	predicted protein [Populus trichocarpa]	1.0e-19	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW8

Fln msg: Separated hits, possible frame ERROR between 63 and 72, Distance to subject end: 121 aas, your sequence is shorter than subject: 68 - 466

Fln protein: ILRVHQFEKVEQFCLTSPNRxxxxSWDMHEEMINNSEDFYKELNIPYQIVSIVSGALNDASCEEICIW

Protein Length: 69

Fln nts: ATTTTAAGAGTGCACCAGTTTGAAAAAGTAGAGCAATTTTGCTTAACTAGCCCAAATCGGAAxxxxxxxxxCTCTTGGGACATGCACGAGGAAATGATTAACAATTCTGAAGACTTCTACAAGGAGCTAAATATTCCCTATCAGATTGTATCAATTGTTTCTGGTGCTTTGAATGATGCTAGCTGCGAAGAAATATGTATTTGGAA

Fln Alignment:

GFXCM5X02GP0DQ___ILRVHQFEKVEQFCLTSPNRKxxxSWDMHEEMINNSEDFYKELNIPYQIVSIVSGALNDASCEE
B8LRW8_______________IFRVHQFEKVEQFCITSPNGKxxxSWDMHEEMIKNSEDFYKELNIPYQIVSIVSGALNDAAAKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain