SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65538

Length: 163 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene65538
CAAGGTCTAGGAGGTTGTCTTCGTCTGATCCTTTCTGGAGCAGCCCCACTGGCTAGACACGTAGAAGAGTTTTTGAGAGTTACGAGCTGTAGTGTTGTAAAAAAGTACAAGGGATATGGTTTGACTGAAACATGTGCTGGAAGTTTTAGTTCCTTGGCCAATG

Ace file of the UniGene sp_v3.0_unigene65538 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative acyl-CoA synthetase [Oryza sativa Japonica Group]	-	-	2.0e-13	72%
FL-Next	sp=Long chain acyl-CoA synthetase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Sma3	Putative acyl-CoA synthetase	-	-	1.559e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	2.524e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid metabolism	00071		2.524e-23	%
Sma3	Metabolic pathways	01100		2.524e-23	%

Source	Gene names
Sma3	8F2.21; ACS1; ACS2; AT4g11030; AT4g23850; At1g64400; At4g11030; At4g23850; F15H21.7; F8M12.15; GSVIVT00006758001; GSVIVT00028146001; GSVIVT00036452001; LACS3; LACS4; LACS5; LOC_Os11g35400; OSJNBa0049H05.27; Os01g0655800; Os01g0681200; Os11g0558300; OsI_03

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G23850.1	LACS4 AMP-dependent synthetase and ligase family protein chr4:12403720-12408263 REVERSE LENGTH=666	1.0e-15	69%
RefSeq	Arabidopsis thaliana	NP_194116.1	long chain acyl-CoA synthetase 4 [Arabidopsis thaliana]	2.0e-15	69%
RefSeq	Populus trichocarpa	XP_002304555.1	predicted protein [Populus trichocarpa]	3.0e-17	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9T0A0

Fln msg: Distance to subject end: 233 aas, your sequence is shorter than subject: 54 - 666

Fln protein: QGLGGCLRLILSGAAPLARHVEEFLRVTSCSVVKKYKGYGLTETCAGSFSSLAN

Protein Length: 55

Fln nts: CAAGGTCTAGGAGGTTGTCTTCGTCTGATCCTTTCTGGAGCAGCCCCACTGGCTAGACACGTAGAAGAGTTTTTGAGAGTTACGAGCTGTAGTGTTGTAAAAAAGTACAAGGGATATGGTTTGACTGAAACATGTGCTGGAAGTTTTAGTTCCTTGGCCAATG

Fln Alignment:

GFXCM5X02GEEWY___QGLGGCLRLILSGAAPLARHVEEFLRVTSCSVVKKYKGYGLTETCAGSFSSL
Q9T0A0_______________QGLGGNVRIILSGAAPLASHVESFLRVVACCHV--LQGYGLTESCAGTFVSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain