SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65318

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene65318
AATGTCATTGTGTACATGGTTGATGCTGCTGATCCTGACAAGATAGAGGCATCTAGGAATGAGCTTCACAATTTGTTGGACAAGCCGCAGCTGATGGGTATTCCAGTGTTGGTTTTGGGTAACAAGAGAGACTTGCCTACCTGCCTTGATGAAAAAGAGCTCATAGACAGGATGAATTTATGTGCTATTCAGGACAGAGAAATATGCTGTTACTCCATTTCATGTAAAAGAAAAGATAACATTGATAT

Ace file of the UniGene sp_v3.0_unigene65318

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: ADP-ribosylation factor-like protein 8B-A-like n=1 Tax=Meleagris gallopavo RepID=UPI0002036811	-	-	2.0e-34	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Arl8-family small GTPase	-	-	1.626e-13	-

Source	Gene names
Sma3	ARL8; Arl8A1; Arl8A2; Arl8A3; At3g49870; At5g37680; At5g67560; At5g67560/K9I9.13; CHLREDRAFT_24097; GSVIVT00004196001; GSVIVT00022444001; K12B20.15; Os02g0732500; OsI_08819; OsJ_08274; P0643A10.22; PHYPADRAFT_108412; PHYPADRAFT_113279; PHYPADRAFT_187270;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49870.1	ATARLA1C, ARLA1C ADP-ribosylation factor-like A1C chr3:18492674-18494021 REVERSE LENGTH=184	2.0e-27	56%
RefSeq	Arabidopsis thaliana	NP_190556.2	ADP-ribosylation factor-like A1C [Arabidopsis thaliana]	3.0e-27	56%
RefSeq	Populus trichocarpa	XP_002298779.1	predicted protein [Populus trichocarpa]	1.0e-27	57%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABR7

Fln msg: STOP codon was not found. Distance to subject end: 13 aas,

Fln protein: MVDAADPDKIEASRNELHNLLDKPQLMGIPVLVLGNKRDLPTCLDEKELIDRMNLCAIQDREICCYSISCKRKDNID

Protein Length: 78

Fln nts: AATGTCATTGTGTAC_-_ATGGTTGATGCTGCTGATCCTGACAAGATAGAGGCATCTAGGAATGAGCTTCACAATTTGTTGGACAAGCCGCAGCTGATGGGTATTCCAGTGTTGGTTTTGGGTAACAAGAGAGACTTGCCTACCTGCCTTGATGAAAAAGAGCTCATAGACAGGATGAATTTATGTGCTATTCAGGACAGAGAAATATGCTGTTACTCCATTTCATGTAAAAGAAAAGATAACATTGATAT

Fln Alignment:

G5KS2UX02FQ6XH___SRNELHNLLDKPQLMGIPVLVLGNKRDLPTCLDEKELIDRMNLCAIQDREICCYSISCKRKDNID
D5ABR7_______________SKSELHDLLNKPSLHGIPLLVLGNKIDKPEALSKQALQDQMGLESITDREVCCYMVSCKNSTNID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain