SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65296

Length: 190 nt

UniGene Fasta

>sp_v3.0_unigene65296
AATGTCATATTCTGTTTTCTGTGGACGAAATCCCAATTAGGGTTTACAAGAACGACAAAGCCAGAGGCCTTCCATTCCCGAGGAATCAGATGATGGGGATCTTCTGTACACTTTGGCAAGCCGATAACTGGGCGACGAGGGGAGGGATTGAGAAGATCGACTGGAGGAAGGCCCCATTCGTGGCCGCGTA

Ace file of the UniGene sp_v3.0_unigene65296

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase n=1 Tax=Dianthus caryophyllus RepID=D7URZ1_DIACA	-	-	5.0e-22	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Xyloglucan endotransglycosylase	-	-	1.366e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	2.12997e-43	-

Source	Gene names
Sma3	19-1-5; AT2G06850; AoXET1; AoXET2; At1g65310; At2g06850; At3g23730; At4g14130; At4g37800; At5g13870; At5g65730; EXGT-A1; EXGT-A4; EXT; FCAALL.173; GSVIVT00003361001; GSVIVT00003461001; GSVIVT00003480001; GSVIVT00006236001; GSVIVT00007248001; GSVIVT0003140

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to low light intensity stimulus	GO:0009645	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G65730.1	XTH6 xyloglucan endotransglucosylase/hydrolase 6 chr5:26299080-26300290 FORWARD LENGTH=292	3.0e-24	61%
RefSeq	Arabidopsis thaliana	NP_569019.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	3.0e-24	61%
RefSeq	Populus trichocarpa	XP_002310324.1	predicted protein [Populus trichocarpa]	1.0e-26	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNK0

Fln msg: Distance to subject end: 60 aas, your sequence is shorter than subject: 62 - 275

Fln protein: CHILFSVDEIPIRVYKNDKARGLPFPRNQMMGIFCTLWQADNWATRGGIEKIDWRKAPFVAA

Protein Length: 63

Fln nts: AATGTCATATTCTGTTTTCTGTGGACGAAATCCCAATTAGGGTTTACAAGAACGACAAAGCCAGAGGCCTTCCATTCCCGAGGAATCAGATGATGGGGATCTTCTGTACACTTTGGCAAGCCGATAACTGGGCGACGAGGGGAGGGATTGAGAAGATCGACTGGAGGAAGGCCCCATTCGTGGCCGCGTA

Fln Alignment:

G5KS2UX02G4U12___HILFSVDEIPIRVYKNDKARGLPFPRNQMMGIFCTLWQADNWATRGGIEKIDWRKAPFVAA
A9NNK0_______________YILFMVDEVPIRVFMNNKALGVPYPERQAMGVFSSIWNGDSWATQGGLVKIDWSHAPFVAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain