SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65182

Length: 131 nt

UniGene Fasta

>sp_v3.0_unigene65182
AATGTGAAAGATTAGCAAATCTGTCAAAGAACGGAATCATTTCCATCGGTCAAAGGACACTGCTGGTGAGTGGAGTATTATTGATGAAGGGGCAAATCCTTTCGCGAGAGGCACTAGAGCACTTAGATTAT

Ace file of the UniGene sp_v3.0_unigene65182

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	(E)-beta-farnesene synthase n=3 Tax=Pseudotsuga menziesii RepID=Q4QSN5_PSEMZ	-	-	3.0e-08	71%
FL-Next	tr=(E)-beta-farnesene synthase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	71%

Source	Gene names
Sma3	TPS-Bis; TPS4; ag1;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	carbon-oxygen lyase activity, acting on phosphates	GO:0016838	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4QSN5

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 43 - 826

Fln protein: CERLANLSKNGIISIGQRTLLVSGVLLMKGQILSREALEHLDY

Protein Length: 44

Fln nts: AATGTGAAAGATTAGCAAATCTGTCAAAGAACGGAATCATTTCCATCGGTCAAAGGACACTGCTGGTGAGTGGAGTATTATTGATGAAGGGGCAAATCCTTTCGCGAGAGGCACTAGAGCACTTAGATTAT

Fln Alignment:

G5KS2UX02HR5ZH___CERLANLS---KNGIISIGQRTLLVSGVLLMKGQILSREALEHLDY
Q4QSN5_______________CEYLPSLEEYIRNGIISIGQRILVVSGVLLMEGQILSQEALEQLDY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain