SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64887

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene64887
AATGTGATTACACATCAGCAGTGATAATCTATGAAATGTGTAGTGGACAAACCCACTGCAACAGTTACAAAAGTTACTCAACAAGAGCGGCGTAAGTATCCTCCTCATCCATTAAGTACAATTGAATTACAGAAACGTGCCTCCCATTATTTCCGCATGAGTTCGGAACATACTATGAAGGTAGCAGAGGAGCTATACCAGTCAGG

Ace file of the UniGene sp_v3.0_unigene64887

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA topoisomerase (Fragment) n=1 Tax=Ricinus communis RepID=B9SN22_RICCO	-	-	2.0e-18	76%
FL-Next	sp=DNA topoisomerase; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	81%

Source	Gene names
Sma3	At5g63920; GSVIVT00006020001; LOC_Os03g06900; OJ1123F12.5; OsI_10148; OsI_30540; OsJ_09535; POPTRDRAFT_861019; RCOM_1519060; TOP3A;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	DNA topoisomerase type I activity	GO:0003917	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-
Sma3	DNA unwinding involved in replication	GO:0006268	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IA	IPR000380	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA topoisomerase, type IA, domain 2	IPR003601	-	-
Sma3	DNA topoisomerase, type IA, DNA-binding	IPR003602	-	-
Sma3		IPR006154	-	-
Sma3	Toprim domain	IPR006171	-	-
Sma3	Zinc finger, GRF-type	IPR010666	-	-
Sma3	DNA topoisomerase, type IA, central	IPR013497	-	-
Sma3	DNA topoisomerase, type IA, zn finger	IPR013498	-	-
Sma3	DNA topoisomerase, type IA, central region, subdomain 1	IPR013824	-	-
Sma3	DNA topoisomerase, type IA, central region, subdomain 3	IPR013826	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G63920.1	TOP3A, AtTOP3alpha topoisomerase 3alpha chr5:25574533-25581230 FORWARD LENGTH=926	5.0e-19	72%
RefSeq	Arabidopsis thaliana	NP_201197.1	DNA topoisomerase III [Arabidopsis thaliana]	6.0e-19	72%
RefSeq	Populus trichocarpa	XP_002307047.1	predicted protein [Populus trichocarpa]	1.0e-18	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7JC55

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 252 aas, your sequence is shorter than subject: 68 - 587

Fln protein: NVITHQQ**SMKCVVDKPTATVTKVTQQERRKYPPHPLSTIELQKRASHYFRMSSEHTMKVAEELYQS

Protein Length: 69

Fln nts: AATGTGATTACACATCAGCAGTGATAATCTATGAAATGTGTAGTGGACAAACCCACTGCAACAGTTACAAAAGTTACTCAACAAGAGCGGCGTAAGTATCCTCCTCATCCATTAAGTACAATTGAATTACAGAAACGTGCCTCCCATTATTTCCGCATGAGTTCGGAACATACTATGAAGGTAGCAGAGGAGCTATACCAGTCAGG

Fln Alignment:

G5KS2UX02F9QA2___VDKPTATVTKVTQQERRKYPPHPLSTIELQKRASHYFRMSSEHTMKVAEELYQ
G7JC55_______________IEEPTATVTKVTPKEKPKYPPHPLSTIELEKRASRYFRMSSERTMKVAEELYQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain