SustainPineDB

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Assembly info
Unigenes
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene64126

Length: 294 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene64126
ACATCATCGACCTCTACAAGGAGAAGGGCATCGGAAAGGAGCGTGTCCTGATCAAGCTCGCCTCGACATGGGAGGGCATCAAGGCCGCCCACACCCTACAGTCCAAGCACGGCGTCAACTGCAACCTTACACTCATGTTCTCCCTCGTCCAAGCCATTGCCGCCGCTGAGGCCGGCGCCTTCCTCATCTCGCCCTTCGTCGGCCGGATCCTCGACTGGTACAAGGCCAACACCAAGCAAGAGTACACCAAGGAGAACGACCCGGGTGTCAAGTCCGTGCAGCAGATCTTACATT

Ace file of the UniGene sp_v3.0_unigene64126 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transaldolase n=3 Tax=Pleosporaceae RepID=A9YFM3_COCHE	-	-	1.0e-35	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Sma3	Transaldolase	-	-	3.158e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transaldolase.	EC:2.2.1.2	-	7.238e-24	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose phosphate pathway	00030	7.238e-24	%
Sma3	Biosynthesis of phenylpropanoids	01061	7.238e-24	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	7.238e-24	%
Sma3	Biosynthesis of plant hormones	01070	7.238e-24	%
Sma3	Metabolic pathways	01100	7.238e-24	%
Sma3	Biosynthesis of secondary metabolites	01110	7.238e-24	%

Source	Gene names
Sma3	CHLREDRAFT_146574; PHATRDRAFT_50313; PHATR_28222; TAL; TAL1; TAL1_1; THAPSDRAFT_11661; THAPSDRAFT_270309; THAPSDRAFT_27187;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	GO:0004801	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	pentose-phosphate shunt	GO:0006098	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transaldolase	IPR001585	-	-
Sma3	Transaldolase type 1	IPR004730	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Transaldolase, active site	IPR018225	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQQ0

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 97 - 387

Fln protein: IIDLYKEKGIGKERVLIKLASTWEGIKAAHTLQSKHGVNCNLTLMFSLVQAIAAAEAGAFLISPFVGRILDWYKANTKQEYTKENDPGVKSVQQILH

Protein Length: 98

Fln nts: ACATCATCGACCTCTACAAGGAGAAGGGCATCGGAAAGGAGCGTGTCCTGATCAAGCTCGCCTCGACATGGGAGGGCATCAAGGCCGCCCACACCCTACAGTCCAAGCACGGCGTCAACTGCAACCTTACACTCATGTTCTCCCTCGTCCAAGCCATTGCCGCCGCTGAGGCCGGCGCCTTCCTCATCTCGCCCTTCGTCGGCCGGATCCTCGACTGGTACAAGGCCAACACCAAGCAAGAGTACACCAAGGAGAACGACCCGGGTGTCAAGTCCGTGCAGCAGATCTTACATT

Fln Alignment:

G5KS2UX02H5LAP___IIDLYKEKGIGKERVLIKLASTWEGIKAAHTLQSKHGVNCNLTLMFSLVQXXXXXXXXAFLISPFVGRILDWYKANT-----KQEYTKENDPGV
C0PQQ0_______________LLKLYEEVEVPQERLLFKIPATWQGIEASRLLEAE-GIQTHVTFVYSFPQAAAAAQAGSSVIQIFVGRVRDWARNHSGDQEIESALARGEDPGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain