SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63950

Length: 226 nt

UniGene Fasta

>sp_v3.0_unigene63950
AATGTCATATATGAATATTTGGATACAAAATTTGGAAAGATGAATGAAAGCATATATTCTATACGCAATTGGATAGTGAGGTTCGTCACTCGAGGGACTTACTTAATTGTTACTACACTGGTGGCAGCAATGTTTCCATTTCTGGGGGATTTTGTGACCCTCACAAGTGCAATTAGTGTCATTCCATTAACATTTGTATTTCCAAACCATATGTACATACAAGTCA

Ace file of the UniGene sp_v3.0_unigene63950

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proline transporter n=1 Tax=Elaeis guineensis RepID=F2Z8K2_ELAGV	-	-	8.0e-17	56%
FL-Next	sp=Probable proline transporter 2; Oryza sativa subsp. japonica (Rice).	-	-	0.0	56%
Sma3	Proline transporter	-	-	4.55e-12	-

Source	Gene names
Sma3	B1026C12.12; GSVIVT00018303001; HvProT; LOC_Os03g44230; LeProT1; LeProT2; OSJNBa0038E17.23; Os03g0644400; Os07g0100800; OsI_12791; OsI_24564; OsJ_11879; OsJ_22765; OsproT; POPTRDRAFT_803283; POPTRDRAFT_805469; PtrProT1; PtrProT2; RCOM_0498260;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55740.1	PROT2, ATPROT2 proline transporter 2 chr3:20695786-20698157 FORWARD LENGTH=439	1.0e-19	52%
RefSeq	Arabidopsis thaliana	NP_974444.1	proline transporter 2 [Arabidopsis thaliana]	9.0e-20	52%
RefSeq	Populus trichocarpa	XP_002316242.1	proline transporter [Populus trichocarpa]	8.0e-21	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q69LA1

Fln msg: Distance to subject end: 48 aas, your sequence is shorter than subject: 75 - 434

Fln protein: NVIYEYLDTKFGKMNESIYSIRNWIVRFVTRGTYLIVTTLVAAMFPFLGDFVTLTSAISVIPLTFVFPNHMYIQV

Protein Length: 76

Fln nts: AATGTCATATATGAATATTTGGATACAAAATTTGGAAAGATGAATGAAAGCATATATTCTATACGCAATTGGATAGTGAGGTTCGTCACTCGAGGGACTTACTTAATTGTTACTACACTGGTGGCAGCAATGTTTCCATTTCTGGGGGATTTTGTGACCCTCACAAGTGCAATTAGTGTCATTCCATTAACATTTGTATTTCCAAACCATATGTACATACAAGTCA

Fln Alignment:

G5KS2UX02JHYPF___IYEYLDTKFGKMNESIYSIRNWIVRFVTRGTYLIVTTLVAAMFPFLGDFVTLTSAISVIPLTFVFPNHMYIQV
Q69LA1_______________MYEFLDTKYGSGHGGPFAIHNVMFRVGVRGGYLTVNTLVAAMLPFLGDFMSLTGALSTFPLTFVLANHMYLMV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain