SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63949

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene63949
AATGTTATACCTTACCAGATATCATCTCCGCTTCATCTTCAAGCTTTTGTCCACCATGTCCAAGTTTCGAAGTGCCACCCTCATGCTTCAGAAGGAATTTGGCCACCGCCTCGTGGCAAAGCCTGGTGATCCCCTTTTCAATCGCCTGGCTGTCAATGTGGATCTTCTGGCCAGTACCAAGCTCCTTATGGATGTGAGCAAGAGGCATTTTACGCCATGCCCT

Ace file of the UniGene sp_v3.0_unigene63949

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] dbj\|BAB10912.1\| dimethyladenosine transferase-like protein [Arabidopsis thaliana] gb\|AED98204.1\| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]	-	-	3.0e-13	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	At5g66360; GSVIVT00036861001; OSTLU_42375; Os07g0509600; OsI_26151; OsJ_24395; Ot08g02870; P0409B11.10; POPTRDRAFT_1106227; RCOM_0533070; VITISV_007907;

Source	GOs	Term	Type	e value	Identity
Sma3	rRNA (adenine-N6,N6-)-dimethyltransferase activity	GO:0000179	Molecular Function	0.0	-
Sma3	rRNA modification	GO:0000154	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	0.0	-
Sma3	Ribosomal RNA adenine dimethylase	IPR011530	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66360.2	Ribosomal RNA adenine dimethylase family protein chr5:26510329-26511711 FORWARD LENGTH=380	5.0e-18	61%
RefSeq	Arabidopsis thaliana	NP_975003.1	Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]	6.0e-18	61%
RefSeq	Populus trichocarpa	XP_002324910.1	predicted protein [Populus trichocarpa]	2.0e-17	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA35

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 74 - 390

Fln protein: MLYLTRYHLRFIFKLLSTMSKFRSATLMLQKEFGHRLVAKPGDPLFNRLAVNVDLLASTKLLMDVSKRHFTPCP

Protein Length: 75

Fln nts: AATGTTATACCTTACCAGATATCATCTCCGCTTCATCTTCAAGCTTTTGTCCACCATGTCCAAGTTTCGAAGTGCCACCCTCATGCTTCAGAAGGAATTTGGCCACCGCCTCGTGGCAAAGCCTGGTGATCCCCTTTTCAATCGCCTGGCTGTCAATGTGGATCTTCTGGCCAGTACCAAGCTCCTTATGGATGTGAGCAAGAGGCATTTTACGCCATGCCCT

Fln Alignment:

G5KS2UX02F3E3V___IFKLLSTMSKFRSATLMLQKEFGHRLVAKPGDPLFNRLAVNVDLLASTKLLMDVSKRHFTPCP
D5AA35_______________IFKLLSTMPKFRNATLMLQKEFGRRLVAKPGDSLFNRLAVNVDLLASAKLLMDVSKRDFTPCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain