SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63677

Length: 202 nt

UniGene Fasta

>sp_v3.0_unigene63677
AATGTGTTGAGAAGTATTGATTTCTGGCTATTATTATTTCGTGTATTTTTGTGGAGGAACAGTGGGGTTAGTGTTTATAAACAACCTTGGCCAGATTGTTCAATCCTTTGGATACTCCAAGACACCAATCCTTGTATCTCTGGTTTCATCATTTGGATTCTTTGGGCGTATTGTTCGGGGCTTCCAGATTATATTCAGCAAT

Ace file of the UniGene sp_v3.0_unigene63677

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	Gene names
Sma3	AT4g19450; At4g19450; GSVIVT00023976001; POPTRDRAFT_799838; POPTRDRAFT_807159; POPTRDRAFT_809735; POPTRDRAFT_826673; RCOM_0866650; RCOM_1136630; RCOM_1515790;

Source	InterPros	Term	Type	e value	Identity
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	0.0	-
Sma3	Nodulin-like	IPR010658	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G45275.1	Major facilitator superfamily protein chr5:18334476-18337240 REVERSE LENGTH=570	2.0e-14	65%
RefSeq	Arabidopsis thaliana	NP_974886.1	major facilitator protein [Arabidopsis thaliana]	2.0e-14	65%
RefSeq	Populus trichocarpa	XP_002326082.1	predicted protein [Populus trichocarpa]	9.0e-15	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 179 aas, your sequence is shorter than subject: 67 - 626

Fln protein: MC*EVLISGYYYFVYFCGGTVGLVFINNLGQIVQSFGYSKTPILVSLVSSFGFFGRIVRGFQIIFSN

Protein Length: 68

Fln nts: AATGTGTTGAGAAGTATTGATTTCTGGCTATTATTATTTCGTGTATTTTTGTGGAGGAACAGTGGGGTTAGTGTTTATAAACAACCTTGGCCAGATTGTTCAATCCTTTGGATACTCCAAGACACCAATCCTTGTATCTCTGGTTTCATCATTTGGATTCTTTGGGCGTATTGTTCGGGGCTTCCAGATTATATTCAGCAAT

Fln Alignment:

G5KS2UX02GDUYV___YFVYFCGGTVGLVFINNLGQIVQSFGYSKTPILVSLVSSFGFFGRIVRG
B8LRH5_______________FFAFLCGVGTGMAVINNMGQIGLAMGFVDVSMFVSLISIWGFFGRIGAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain