SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63583

Length: 195 nt

UniGene Fasta

>sp_v3.0_unigene63583
AAGGTAGCCAACCCGTCTACACACTTGTCTGTGGTGGGAAACTTTGTAGGATCTCTATTAGCGGCTCGCTTGGGCTGGATGGAGCCTGCAAAATTCTTATGGGCCGTAGGGCTGGCCCATTACTTAGTATTATTTGTGACACTCTACCAGAGGTTGCCTACCAGTGAAACGCTGCCCAAGGAACTCCATCCAGTA

Ace file of the UniGene sp_v3.0_unigene63583

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C4-dicarboxylate transporter/malic acid transport protein [Arabidopsis thaliana] sp\|Q9LD83.1\|SLAC1_ARATH RecName: Full=Guard cell S-type anion channel SLAC1; AltName: Full=Protein CARBON DIOXIDE INSENSITIVE 3; AltName: Full=Protein OZONE-SENSITIVE 1; AltN	-	-	3.0e-25	83%
FL-Next	sp=Guard cell S-type anion channel SLAC1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%
Sma3	Tellurite resistance protein tehA, putative	-	-	6.505e-09	-

Source	Gene names
Sma3	At1g12480; At4g27970; At5g24030; B1003C08.2; GSVIVT00001037001; GSVIVT00014507001; GSVIVT00025895001; GSVIVT00037797001; OJ1014_E09.31; OSJNBa0004G10.36; OSJNBa0009C07.7; OSJNBa0019K04.20; OSJNBa0049B20.15; OSJNBb0093M23.26; Os01g0226600; Os01g0385400; Os

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	anion transport	GO:0006820	Biological Process	-
Sma3	cellular ion homeostasis	GO:0006873	Biological Process	-
Sma3	response to humidity	GO:0009270	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to carbon dioxide	GO:0010037	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	multicellular organismal water homeostasis	GO:0050891	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	C4-dicarboxylate transporter/malic acid transport protein	IPR004695	-	0.0	-
Sma3	Peroxidase, active site	IPR019794	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12480.1	OZS1, SLAC1, RCD3, CDI3 C4-dicarboxylate transporter/malic acid transport protein chr1:4257427-4259249 REVERSE LENGTH=556	3.0e-32	83%
RefSeq	Arabidopsis thaliana	NP_563909.1	C4-dicarboxylate transporter/malic acid transport protein [Arabidopsis thaliana]	4.0e-32	83%
RefSeq	Populus trichocarpa	XP_002329721.1	c4-dicarboxylate transporter/malic acid transport protein [Populus trichocarpa]	1.0e-26	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LD83

Fln msg: Distance to subject end: 167 aas, your sequence is shorter than subject: 65 - 556

Fln protein: KVANPSTHLSVVGNFVGSLLAARLGWMEPAKFLWAVGLAHYLVLFVTLYQRLPTSETLPKELHPV

Protein Length: 66

Fln nts: AAGGTAGCCAACCCGTCTACACACTTGTCTGTGGTGGGAAACTTTGTAGGATCTCTATTAGCGGCTCGCTTGGGCTGGATGGAGCCTGCAAAATTCTTATGGGCCGTAGGGCTGGCCCATTACTTAGTATTATTTGTGACACTCTACCAGAGGTTGCCTACCAGTGAAACGCTGCCCAAGGAACTCCATCCAGTA

Fln Alignment:

G5KS2UX02I8IRA___KVANPSTHLSVVGNFVGSLLAARLGWMEPAKFLWAVGLAHYLVLFVTLYQRLPTSETLPKELHPV
Q9LD83_______________KVANPSSHLSVVGNFVGAILASKVGWDEVAKFLWAVGFAHYLVVFVTLYQRLPTSEALPKELHPV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain