SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63352

Length: 293 nt

UniGene Fasta

>sp_v3.0_unigene63352
GTCTCAACTTATTTTCAAGAAATTACAAATCAATCCTTTTGGGAATTTGCTAAGGTTCAGCAGTTGTAGTATTTAAATTAAAGCAAGTTGTGGACTACCCTCATGTTGCCTCACCGAAGGGTTTCTTCTCAATGGTAAATTCAGCGTTCAACGGGAAACGTAAAATGCTTAGAAAATCACTTCACTTATGTGCGTCTTCTGATGTTGAATCTGCGCTCAGAACTCTTGGTCTTCCGGAGACAGTCTCTGGAGGGGTCACTCATATTCCCATATGTCTATATGTCTGTAGTGTA

Ace file of the UniGene sp_v3.0_unigene63352

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Identical to dimethyladenosine transferase from Arabidopsis thaliana gb\|AF051326. It contains ribosomal RNA adenine dimethylases PF\|00398. This gene is cut off	-	-	3.0e-14	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Dimethyladenosine transferase	-	-	6.298e-09	-

Source	Gene names
Sma3	At1g01860; At1g01860/F22M8_1; GSVIVT00026254001; MtrDRAFT_AC155886g27v2; MtrDRAFT_AC160924g3v1; OsI_05650; OsJ_05183; PFC1; PHYPADRAFT_161405; POPTRDRAFT_244291; RCOM_1613710; T1N6.27;

Source	GOs	Term	Type	Identity
Sma3	rRNA (adenine-N6,N6-)-dimethyltransferase activity	GO:0000179	Molecular Function	-
Sma3	rRNA modification	GO:0000154	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Ribosomal RNA adenine dimethylase	IPR011530	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01860.1	PFC1 Ribosomal RNA adenine dimethylase family protein chr1:304439-306275 REVERSE LENGTH=343	4.0e-19	66%
RefSeq	Arabidopsis thaliana	NP_171690.1	Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]	5.0e-19	66%
RefSeq	Populus trichocarpa	XP_002320767.1	predicted protein, partial [Populus trichocarpa]	8.0e-19	68%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADG3

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 97 - 351

Fln protein: LNLFSRNYKSILLGIC*GSAVVVFKLKQVVDYPHVASPKGFFSMVNSAFNGKRKMLRKSLHLCASSDVESALRTLGLPETVSGGVTHIPICLYVCSV

Protein Length: 98

Fln nts: GTCTCAACTTATTTTCAAGAAATTACAAATCAATCCTTTTGGGAATTTGCTAAGGTTCAGCAGTTGTAGTATTTAAATTAAAGCAAGTTGTGGACTACCCTCATGTTGCCTCACCGAAGGGTTTCTTCTCAATGGTAAATTCAGCGTTCAACGGGAAACGTAAAATGCTTAGAAAATCACTTCACTTATGTGCGTCTTCTGATGTTGAATCTGCGCTCAGAACTCTTGGTCTTCCGGAGACAGTCTCTGGAGGGGTCACTCATATTCCCATATGTCTATATGTCTGTAGTGTA

Fln Alignment:

G5KS2UX02JDQ61___SAVVVFKLKQVVDYPHVASPKGFFSMVNSAFNGKRKMLRKSL-HLCASSDVESALRTLGLPETVSGG
D5ADG3_______________AAVVVFKLKQVVDYPHVASPKGFFSMVNSAFNGKRKMLRKSLQHLCASRDIESALRTLGLPETSRPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain