SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62862

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene62862
AATGTAGTTTCCCTGAAGAGAGATAAATTCGTTCCCAATACCATGGCGAACATGATTGGCATATCAGTTGGAGTCGCCTTTGCAGCATACGGGGAGGCCAAGTTCGATTCATGGGGCGTGTTGCTTCAATTGGGTGCAGTTTTCCTTTTGATCGGAAAGACTTCAGCTTTGACGATGAACGTGGCTGGTGTTGTCAAGGATTGGCTTCTTATTGCATTCTCAT

Ace file of the UniGene sp_v3.0_unigene62862

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotide-sugar transporter family protein [Arabidopsis thaliana] sp\|Q9SUV2.1\|PT432_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At4g32390 emb\|CAA22566.1\| putative protein [Arabidopsis thaliana] emb\|CAB79956.1\| putative protein [Ar	-	-	6.0e-10	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Plastidic phosphate translocator-like protein1	-	-	1.567e-11	-

Source	Gene names
Sma3	AT2G25520; AT4g32390; At2g25520; At4g32390; At5g11230; At5g25400; CHLREDRAFT_186850; CHLREDRAFT_191102; EZY14; F2I11_120; F8B4.90; GSVIVT00016883001; GSVIVT00032633001; LOC_Os11g04380; LOC_Os12g04170; OJ1579_G03.4; Os05g0494500; Os11g0139400; Os12g0136100

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Basic leucine zipper	IPR011700	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G32390.1	Nucleotide-sugar transporter family protein chr4:15636550-15637602 FORWARD LENGTH=350	3.0e-14	68%
RefSeq	Arabidopsis thaliana	NP_194965.1	Nucleotide-sugar transporter family protein [Arabidopsis thaliana]	4.0e-14	68%
RefSeq	Populus trichocarpa	XP_002309616.1	predicted protein [Populus trichocarpa]	3.0e-15	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQV0

Fln msg: Distance to subject end: 73 aas, your sequence is shorter than subject: 74 - 357

Fln protein: NVVSLKRDKFVPNTMANMIGISVGVAFAAYGEAKFDSWGVLLQLGAVFLLIGKTSALTMNVAGVVKDWLLIAFS

Protein Length: 75

Fln nts: AATGTAGTTTCCCTGAAGAGAGATAAATTCGTTCCCAATACCATGGCGAACATGATTGGCATATCAGTTGGAGTCGCCTTTGCAGCATACGGGGAGGCCAAGTTCGATTCATGGGGCGTGTTGCTTCAATTGGGTGCAGTTTTCCTTTTGATCGGAAAGACTTCAGCTTTGACGATGAACGTGGCTGGTGTTGTCAAGGATTGGCTTCTTATTGCATTCTCAT

Fln Alignment:

G5KS2UX02JPGPM___VSLKRDKFVPNTMANMIGISVGVAFAAYGEAKFDSWGVLLQLGAV
B8LQV0_______________VSLKKETFRSNTMANMIGISVGVAIAAYGEAKFDSWGVLLQLGAV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain