SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62806

Length: 208 nt

UniGene Fasta

>sp_v3.0_unigene62806
AATGTGATATGAGGCTCATCATCGGGAAGTGATGGGTAACAGCGTGTCCCGCGTGGTGGGATGCTTTATGCCCGCGGGGAATGAGCAGGAGCGCGTGGGATTGGTGTTCTCGGAGCCATTAGACGAGGGGCTCGGCCACTCTTTCTGCTACGTGAGGCCACCGGTGCTGGAATCTGCGAGGTTCTCGCCGGGCTCGCAGTCGGAGCGG

Ace file of the UniGene sp_v3.0_unigene62806

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphatase 2C 32 n=3 Tax=Arabidopsis RepID=P2C32_ARATH	-	-	2.0e-12	64%
FL-Next	sp=Protein phosphatase 2C 32; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%

Source	Gene names
Sma3	AT2G46920; At2g46920; F14M4.25; GSVIVT00028212001; PHYPADRAFT_209656; PHYPADRAFT_227370; POL; POPTRDRAFT_1098815; POPTRDRAFT_830425; RCOM_1342130; VITISV_031357;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	maintenance of meristem identity	GO:0010074	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46920.1	POL Protein phosphatase 2C family protein chr2:19278106-19280921 REVERSE LENGTH=856	6.0e-17	64%
RefSeq	Arabidopsis thaliana	NP_850464.1	membrane associated protein phosphatase 2C [Arabidopsis thaliana]	8.0e-17	64%
RefSeq	Populus trichocarpa	XP_002320925.1	predicted protein [Populus trichocarpa]	7.0e-16	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8RWN7

Fln msg: Distance to subject end: 799 aas, your sequence is shorter than subject: 59 - 856

Fln protein: MGNSVSRVVGCFMPAGNEQERVGLVFSEPLDEGLGHSFCYVRPPVLESARFSPGSQSER

Protein Length: 60

Fln nts: AATGTGATATGAGGCTCATCATCGGGAAGTG_-_ATGGGTAACAGCGTGTCCCGCGTGGTGGGATGCTTTATGCCCGCGGGGAATGAGCAGGAGCGCGTGGGATTGGTGTTCTCGGAGCCATTAGACGAGGGGCTCGGCCACTCTTTCTGCTACGTGAGGCCACCGGTGCTGGAATCTGCGAGGTTCTCGCCGGGCTCGCAGTCGGAGCGG

Fln Alignment:

G5KS2UX02H8P1E___MGNSVSRVVGCFMPAGNEQERVGLVFSEPLDEGLGHSFCYVRPPVLESARFSPGSQSER
Q8RWN7_______________MGNGTSRVVGCFVPS-NDKNGVDLEFLEPLDEGLGHSFCYVRPSIFESPDITP-SNSER

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain