SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62599

Length: 120 nt

UniGene Fasta

>sp_v3.0_unigene62599
AATGTATCTTGATAAATTGCTTGCTCCTGATCAACCATGCCATAGTAGCTTATGGGTGGGTATACTGGCATTTCATATGGCCTTAGTGAATAAGCCTCAAGATGTTCTTCTTGTTACTGC

Ace file of the UniGene sp_v3.0_unigene62599

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	72%

Source	Gene names
Sma3	GSVIVT00011748001; POPTRDRAFT_757832; POPTRDRAFT_773250;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Poly A polymerase, head domain	IPR002646	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23690.1	Polynucleotide adenylyltransferase family protein chr5:7987664-7990466 FORWARD LENGTH=527	3.0e-12	69%
RefSeq	Arabidopsis thaliana	NP_197758.2	Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]	4.0e-12	69%
RefSeq	Populus trichocarpa	XP_002304649.1	predicted protein [Populus trichocarpa]	1.0e-13	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GZ39

Fln msg: Distance to subject end: 159 aas, your sequence is shorter than subject: 39 - 525

Fln protein: MYLDKLLAPDQPCHSSLWVGILAFHMALVNKPQDVLLVT

Protein Length: 40

Fln nts: AATGTATCTTGATAAATTGCTTGCTCCTGATCAACCATGCCATAGTAGCTTATGGGTGGGTATACTGGCATTTCATATGGCCTTAGTGAATAAGCCTCAAGATGTTCTTCTTGTTACTGC

Fln Alignment:

G5KS2UX02F7YGR___LDKLLAPDQPCHSSLWVGILAFHMALVNKPQDVLLVT
B9GZ39_______________LDRLVAPDRPCHSSLWLGIFAFHKALVDQPQDPLVVT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain