SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62542

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene62542
AATGTTACAAGTATCGGCTTATGCGGCAAATAAGAATGTGTAAAGATTCTGAAGCACTTGATTTATTATCGCTTTAACACTGGGCCTGTTGGGAAAGGACCTGGATGTGGATTTTGGGCTCCAATGTGGAGGGTATGGTTGTTTTTTCTACGTGGTATAGTCCCACTGCTAGAAAGGTGGCTTGGAAACTTGCTTGCACGACAGTTTGAAGGTCGTCATTCAAAGGGAGTGG

Ace file of the UniGene sp_v3.0_unigene62542

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb\|AAD55467.1\|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb\|AEE36353.1\| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana]	-	-	4.0e-36	98%
FL-Next	tr=Putative uncharacterized protein Sb10g004682; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	98%

Source	Gene names
Sma3	AT4g38780; At4g38780; CHLREDRAFT_129368; F18B13.15; GSVIVT00000309001; MICPUCDRAFT_48200; MICPUN_107163; OSJNBb0099P06.8; OSTLU_50795; Os05g0163200; OsI_18577; OsI_21820; OsJ_17229; OsJ_20259; Ot11g00260; P0680A03.20-1; PHATRDRAFT_19982; PHYPADRAFT_200564

Source	GOs	Term	Type	Identity
Sma3	spliceosomal complex	GO:0005681	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	-
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Pre-mRNA-processing-splicing factor 8	IPR012591	-	-
Sma3	PROCN	IPR012592	-	-
Sma3	PRO, C-terminal	IPR012984	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G38780.1	Pre-mRNA-processing-splicing factor chr4:18101438-18111029 REVERSE LENGTH=2332	4.0e-39	98%
RefSeq	Arabidopsis thaliana	NP_195589.2	Pre-mRNA-processing-splicing factor [Arabidopsis thaliana]	6.0e-39	98%
RefSeq	Populus trichocarpa	XP_002327417.1	predicted protein [Populus trichocarpa]	2.0e-38	98%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: C5Z4Y4

Fln msg: Distance to subject end: 306 aas, atg_distance in limit (1-15): atg_distance = 2, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 66 - 384

Fln protein: ECVKILKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGV

Protein Length: 67

Fln nts: AATGTTACAAGTATCGGCTTATGCGGCAAATAAGA_-_ATGTGTAAAGATTCTGAAGCACTTGATTTATTATCGCTTTAACACTGGGCCTGTTGGGAAAGGACCTGGATGTGGATTTTGGGCTCCAATGTGGAGGGTATGGTTGTTTTTTCTACGTGGTATAGTCCCACTGCTAGAAAGGTGGCTTGGAAACTTGCTTGCACGACAGTTTGAAGGTCGTCATTCAAAGGGAGTGG

Fln Alignment:

G5KS2UX02FWWXU___KILKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGV
C5Z4Y4_______________KDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain