SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62043

Length: 159 nt

UniGene Fasta

>sp_v3.0_unigene62043
AATGTGTTATAGTACAAGCTACAGCAGGAACTTTTGGCAGGTGCAGCTTCATCTGTTTTGACCACTCCATTAGATACCATAAAAACACGTCTTCAGGTTATGGATAATTATGGTGAAGGCAGGCCATCCGTCATGAAGACGGCGAGGCAACTACTGAAA

Ace file of the UniGene sp_v3.0_unigene62043

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mito_carr domain containing protein	-	-	2.0e-07	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Gene names
Sma3	Os01g0329400; OsI_01701; OsJ_01570; P0554D10.15; POPTRDRAFT_820539; RCOM_1002740;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002312303.1	predicted protein [Populus trichocarpa]	3.0e-16	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACT4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 40 aas, your sequence is shorter than subject: 53 - 318

Fln protein: NVL*YKLQQELLAGAASSVLTTPLDTIKTRLQVMDNYGEGRPSVMKTARQLLK

Protein Length: 54

Fln nts: AATGTGTTATAGTACAAGCTACAGCAGGAACTTTTGGCAGGTGCAGCTTCATCTGTTTTGACCACTCCATTAGATACCATAAAAACACGTCTTCAGGTTATGGATAATTATGGTGAAGGCAGGCCATCCGTCATGAAGACGGCGAGGCAACTACTGAAA

Fln Alignment:

G5KS2UX02IUCXJ___LLAGAASSVLTTPLDTIKTRLQVMDNYGEGRPSVMKTARQLL
D5ACT4_______________IFAGAIASCTTTPLDTIKTRLQVMDI--ESAPSIKQTIERLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain